Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422855.1

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

604 .. 1309

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggttgctctgaaggcactaaaagcaaacgaagagacatgtacacacatgaaatgcacatttggcggggtatggaatggtggaggaggggatggactaaagaacctttttgttgcctcgtttttctttgacagagctgctgaggctggttttgttaacccaaacgaacctgttgccaaagttcgccctggacactttgacgaggcagctaagcgtgcttgccaaactaaacttgaggatgccaaatccacgtatccaaatgttgaagaggacaacctgccttacttgtgcatggatcttgtttaccagtttacattgcttgtagatggatttggtctagatccatggcaagagattacattggtgaagaaagttaaatataataacgccttggttgaagcggcatggccactaggcagtgccatagaagcggtttcctcattaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

149

Amino Acids

16.31

Weight (kDa)

5.01

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	285
AciI	CCGC	3 cut(s)	66, 401, 431
AclWI	GGATC	2 cut(s)	303, 335
AcoI	YGGCCR	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	266, 398
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	137, 209
AluI	AGCT	2 cut(s)	137, 209
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	303, 335
AoxI	GGCC	1 cut(s)	407
ApeKI	GCWGC	2 cut(s)	137, 206
AsuHPI	GGTGA	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	409
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	124, 218
BccI	CCATC	2 cut(s)	86, 320
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	2 cut(s)	338, 413
BfuAI	ACCTGC	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	3 cut(s)	138, 207, 402
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	139, 208, 403
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	187, 344, 390
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	187, 344, 390
BseGI	GGATG	2 cut(s)	97, 244
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	124, 218
BshFI	GGCC	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	295, 340
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	3 cut(s)	66, 401, 431
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	303, 335
BsrDI	GCAATG	1 cut(s)	314
BsrGI	TGTACA	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	187, 344, 390
BssMI	GATC	2 cut(s)	295, 340
BssT1I	CCWWGG	2 cut(s)	344, 390
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	27, 261
BstAUI	TGTACA	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	216, 220
BstDEI	CTNAG	2 cut(s)	141, 210
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	97, 244
BstKTI	GATC	2 cut(s)	298, 343
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	295, 340
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 23, 63, 143, 215, 428
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	124, 218
BstX2I	RGATCY	2 cut(s)	295, 340
BstYI	RGATCY	2 cut(s)	295, 340
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	409
BtgI	CCRYGG	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	97, 244
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	216, 220
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	5 cut(s)	39, 49, 292, 345, 405
CviJI	RGCY	4 cut(s)	137, 146, 209, 409
CviKI_1	RGCY	4 cut(s)	137, 146, 209, 409
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	141, 210
DpnI	GATC	2 cut(s)	297, 342
DpnII	GATC	2 cut(s)	295, 340
EaeI	YGGCCR	1 cut(s)	407
Eam1104I	CTCTTC	2 cut(s)	27, 261
EarI	CTCTTC	2 cut(s)	27, 261
Eco130I	CCWWGG	2 cut(s)	344, 390
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	344, 390
ErhI	CCWWGG	2 cut(s)	344, 390
FaeI	CATG	5 cut(s)	42, 52, 295, 348, 408
FaiI	YATR	8 cut(s)	40, 50, 73, 293, 346, 381, 406, 425
FatI	CATG	5 cut(s)	38, 48, 291, 344, 404
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	138, 207, 402
FokI	GGATG	2 cut(s)	104, 251
Fsp4HI	GCNGC	3 cut(s)	138, 207, 402
FspBI	CTAG	2 cut(s)	338, 413
GluI	GCNGC	3 cut(s)	138, 207, 402
HaeIII	GGCC	1 cut(s)	409
Hin1II	CATG	5 cut(s)	42, 52, 295, 348, 408
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaI	GTTAAC	1 cut(s)	157
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	4 cut(s)	44, 157, 304, 312
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	4 cut(s)	44, 157, 304, 312
HpyAV	CCTTC	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	57, 291
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 23, 63, 143, 215, 428
HpyF3I	CTNAG	2 cut(s)	141, 210
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	5 cut(s)	42, 52, 295, 348, 408
KspAI	GTTAAC	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	295, 340
LpnPI	CCDG	6 cut(s)	132, 174, 183, 201, 290, 320
Lsp1109I	GCAGC	2 cut(s)	124, 218
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	338, 413
MaeII	ACGT	1 cut(s)	251
MalI	GATC	2 cut(s)	297, 342
MboI	GATC	2 cut(s)	295, 340
MboII	GAAGA	3 cut(s)	44, 278, 379
MflI	RGATCY	2 cut(s)	295, 340
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	409
MnlI	CCTC	8 cut(s)	77, 80, 127, 136, 196, 229, 262, 448
Mox20I	TGGCCA	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	3 cut(s)	156, 375, 443
Msp20I	TGGCCA	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	14, 23, 63, 143, 215, 428
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	2 cut(s)	295, 340
NlaIII	CATG	5 cut(s)	42, 52, 295, 348, 408
NspI	RCATGY	1 cut(s)	42
PciI	ACATGT	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	139, 208, 403
Ppu21I	YACGTR	1 cut(s)	252
PscI	ACATGT	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	295, 340
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	156, 375, 443
SatI	GCNGC	3 cut(s)	138, 207, 402
Sau3AI	GATC	2 cut(s)	295, 340
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	6 cut(s)	108, 139, 172, 211, 254, 279
SfaNI	GCATC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	3 cut(s)	66, 401, 431
SspMI	CTAG	2 cut(s)	338, 413
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	344, 390
TaiI	ACGT	1 cut(s)	254
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	404
Tru1I	TTAA	3 cut(s)	156, 375, 443
Tru9I	TTAA	3 cut(s)	156, 375, 443
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	2 cut(s)	137, 206
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	424
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	2 cut(s)	338, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.