Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

17017 .. 17436

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atgctcaaacgtcccaccaaagatagcatcgactccctctctaataagctctacaggtaccagagcctcctcctcctcttgaccacgctcctgtacctaacgccctcctctcacattcctatccagactctcgcttccacttcctactcagtcatctttgacaccagaagctatggtagccgcgttcatgtcttctcctttgaccgcaacctcaatgtgctccccatcgataaagatctcgacctcttccttcagatcaagccggagctcagcttctacgccgccgaccctcgcagcgccacccagtcactcaccaatctcctccaaaaggcgaaggccgcctttcccaaagatcttctatccatggtttcccgacccagaaaaccaaccccaagaaattttcttttcttttttatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

9.93

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	181, 205, 282, 339
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	2 cut(s)	59, 95
AfiI	CCNNNNNNNGG	1 cut(s)	328
AluBI	AGCT	4 cut(s)	49, 171, 268, 273
AluI	AGCT	4 cut(s)	49, 171, 268, 273
Alw21I	GWGCWC	2 cut(s)	222, 270
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	397
Asp718I	GGTACC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	222, 270
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	300
BglII	AGATCT	2 cut(s)	235, 352
BisI	GCNGC	4 cut(s)	181, 282, 295, 339
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	4 cut(s)	182, 283, 296, 340
BmiI	GGNNCC	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	184
Bpu1102I	GCTNAGC	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	162, 283
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	5 cut(s)	59, 62, 65, 97, 311
BseXI	GCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	222, 270
BsiSI	CCGG	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	328
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	222, 270
Bsp143I	GATC	3 cut(s)	235, 255, 352
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	181, 205, 282, 339
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	2 cut(s)	161, 282
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	235, 255, 352
BssT1I	CCWWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	148, 269
BstDSI	CCRYGG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	3 cut(s)	238, 258, 355
BstMBI	GATC	3 cut(s)	235, 255, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 338
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	235, 352
BstYI	RGATCY	2 cut(s)	235, 352
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	338
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	363
CfoI	GCGC	1 cut(s)	299
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	58, 94
CviAII	CATG	2 cut(s)	188, 364
CviJI	RGCY	8 cut(s)	49, 66, 171, 180, 262, 268, 273, 338
CviKI_1	RGCY	8 cut(s)	49, 66, 171, 180, 262, 268, 273, 338
CviQI	GTAC	2 cut(s)	58, 94
DdeI	CTNAG	2 cut(s)	148, 269
DpnI	GATC	3 cut(s)	237, 257, 354
DpnII	GATC	3 cut(s)	235, 255, 352
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	191, 367
FaiI	YATR	3 cut(s)	174, 189, 365
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	2 cut(s)	187, 363
Fnu4HI	GCNGC	4 cut(s)	181, 282, 295, 339
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	181, 282, 295, 339
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	4 cut(s)	181, 282, 295, 339
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	191, 367
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	2 cut(s)	32, 127
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	79, 124, 239, 372
HpyAV	CCTTC	2 cut(s)	260, 328
HpyCH4IV	ACGT	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 338
HpyF3I	CTNAG	2 cut(s)	148, 269
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	191, 367
HspAI	GCGC	1 cut(s)	297
KpnI	GGTACC	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	235, 255, 352
LmnI	GCTCC	3 cut(s)	93, 225, 265
LpnPI	CCDG	8 cut(s)	40, 74, 104, 137, 178, 276, 317, 391
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	3 cut(s)	237, 257, 354
MboI	GATC	3 cut(s)	235, 255, 352
MboII	GAAGA	3 cut(s)	184, 238, 347
MflI	RGATCY	2 cut(s)	235, 352
MhlI	GDGCHC	2 cut(s)	222, 270
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	2 cut(s)	26, 121
MseI	TTAA	1 cut(s)	418
MspI	CCGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	177, 338
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	235, 255, 352
NlaIII	CATG	2 cut(s)	191, 367
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	182, 283, 296, 340
PleI	GAGTC	2 cut(s)	26, 121
PpsI	GAGTC	2 cut(s)	26, 121
Psp124BI	GAGCTC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	235, 352
RsaI	GTAC	2 cut(s)	59, 95
RsaNI	GTAC	2 cut(s)	58, 94
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	4 cut(s)	181, 282, 295, 339
Sau3AI	GATC	3 cut(s)	235, 255, 352
SchI	GAGTC	2 cut(s)	26, 121
SduI	GDGCHC	2 cut(s)	222, 270
SetI	ASST	9 cut(s)	13, 51, 59, 99, 173, 213, 246, 270, 275
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	4 cut(s)	181, 205, 282, 339
SstI	GAGCTC	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	30, 228, 240
TasI	AATT	1 cut(s)	397
TauI	GCSGC	3 cut(s)	183, 284, 341
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	176
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.