FvH4_6g11760

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001988
Physical Location & Seq
Reverse (-)
7032605 .. 7033036
432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11760.t1

Sequence Viewer

Length: 432 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGGCAGCTCCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACTAAGCCCGATCTCAGCTCCTACGCCTCCAACCCTCGCAGCGCCGCCCTGTCGCTCTCAGATCTCCTCCACAAGGCCGAAGCGGCCGTTCCTAAGGACCTGCGCCCCTTCACCCCCGTTCGCGTTGGCGCAACCGCCAGCCTCCGGGCGTTAGGTGTTAATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCGATGGAACTAAAGTTTACTGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

144

Amino Acids

15.54

Weight (kDa)

9.17

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 25 - 139 1.3e-24 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccII CGCG 1 cut(s) 279
AciI CCGC 3 cut(s) 201, 239, 291
AcoI YGGCCR 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 229, 300
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 5 cut(s) 81, 145, 174, 369, 378
AluI AGCT 5 cut(s) 81, 145, 174, 369, 378
Alw21I GWGCWC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 3 cut(s) 231, 240, 339
ApeKI GCWGC 2 cut(s) 78, 195
AspLEI GCGC 3 cut(s) 200, 261, 287
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 249
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 90, 207
BccI CCATC 2 cut(s) 134, 401
BceAI ACGGC 2 cut(s) 227, 326
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 264
BglI GCCNNNNNGGC 1 cut(s) 239
BglII AGATCT 2 cut(s) 136, 217
BisI GCNGC 4 cut(s) 79, 196, 201, 240
BlsI GCNGC 4 cut(s) 80, 197, 202, 241
Bme1390I CCNGG 2 cut(s) 302, 338
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 302, 338
BmsI GCATC 2 cut(s) 329, 379
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 2 cut(s) 137, 320
Bpu10I CCTNAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 300
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 428
Bse21I CCTNAGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 338
BseCI ATCGAT 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 229, 300
BseMII CTCAG 3 cut(s) 184, 228, 388
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 4 cut(s) 37, 40, 110, 212
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 90, 207
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 233, 242, 341
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 2 cut(s) 75, 301
BslI CCNNNNNNNGG 2 cut(s) 229, 300
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 3 cut(s) 233, 242, 341
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 136, 166, 217
BspACI CCGC 3 cut(s) 201, 239, 291
BspANI GGCC 3 cut(s) 233, 242, 341
BspCNI CTCAG 3 cut(s) 183, 227, 387
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 3 cut(s) 136, 166, 217
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 76, 295
BstDEI CTNAG 5 cut(s) 159, 170, 214, 249, 374
BstENI CCTNNNNNAGG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 3 cut(s) 200, 261, 287
BstKTI GATC 3 cut(s) 139, 169, 220
BstMBI GATC 3 cut(s) 136, 166, 217
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 2 cut(s) 239, 375
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 300, 336
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 90, 207
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 136, 217
BstYI RGATCY 2 cut(s) 136, 217
BstZI CGGCCG 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 405
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 3 cut(s) 233, 242, 341
BsuTUI ATCGAT 1 cut(s) 405
BtrI CACGTC 1 cut(s) 91
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 76, 295
CfoI GCGC 3 cut(s) 200, 261, 287
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 405
CviAII CATG 1 cut(s) 16
DdeI CTNAG 5 cut(s) 159, 170, 214, 249, 374
DpnI GATC 3 cut(s) 138, 168, 219
DpnII GATC 3 cut(s) 136, 166, 217
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 79, 196, 201, 240
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 4 cut(s) 79, 196, 201, 240
GlaI GCGC 3 cut(s) 199, 260, 286
GluI GCNGC 4 cut(s) 79, 196, 201, 240
GsuI CTGGAG 2 cut(s) 137, 320
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 3 cut(s) 233, 242, 341
HapII CCGG 2 cut(s) 75, 301
HhaI GCGC 3 cut(s) 200, 261, 287
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 3 cut(s) 198, 259, 285
HinP1I GCGC 3 cut(s) 198, 259, 285
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 2 cut(s) 75, 301
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 88, 421
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 131, 217
Hpy188III TCNNGA 2 cut(s) 140, 154
Hpy8I GTNNAC 2 cut(s) 88, 421
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 12, 90
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 375
HpyF3I CTNAG 5 cut(s) 159, 170, 214, 249, 374
HpySE526I ACGT 2 cut(s) 12, 90
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 3 cut(s) 198, 259, 285
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 136, 166, 217
LguI GCTCTTC 1 cut(s) 152
LmnI GCTCC 4 cut(s) 86, 179, 374, 383
Lsp1109I GCAGC 2 cut(s) 90, 207
LweI GCATC 2 cut(s) 329, 379
MaeII ACGT 2 cut(s) 12, 90
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 138, 168, 219
MboI GATC 3 cut(s) 136, 166, 217
MboII GAAGA 2 cut(s) 85, 139
MflI RGATCY 2 cut(s) 136, 217
MhlI GDGCHC 1 cut(s) 147
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 210
Mph1103I ATGCAT 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 315
MspI CCGG 2 cut(s) 75, 301
MspR9I CCNGG 2 cut(s) 302, 338
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 239, 375
NaeI GCCGGC 1 cut(s) 76
NciI CCSGG 1 cut(s) 302
NdeII GATC 3 cut(s) 136, 166, 217
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 152
PctI GAATGC 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 4 cut(s) 80, 197, 202, 241
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspPI GGNCC 1 cut(s) 253
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 2 cut(s) 136, 217
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 4 cut(s) 79, 196, 201, 240
Sau3AI GATC 3 cut(s) 136, 166, 217
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 2 cut(s) 302, 338
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 329, 379
SfiI GGCCNNNNNGGCC 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 140, 356
SmoI CTYRAG 2 cut(s) 140, 356
SsiI CCGC 3 cut(s) 201, 239, 291
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 300, 336
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 15, 93
TaqI TCGA 3 cut(s) 102, 141, 405
TauI GCSGC 2 cut(s) 203, 242
TfiI GAWTC 2 cut(s) 34, 40
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 78, 195
TspGWI ACGGA 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.