FvH4_4g13450

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001988
Physical Location & Seq
Forward (+)
17054422 .. 17055432
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13450.t1

Sequence Viewer

Length: 456 bp
ATGGTCTTCTACGTCATGCCCTCTCAGACTCTGATTCAGATTCACTCCTCTTCCGACTCCAAGACCTCCTACGCCGACAGCTCCGGCAGCTGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAAACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGCGCCACCCTGTCGCTCTCAGATCTCCTCCACAAGGCCGAAGCCGTTGTTCCTAAGGACCTGCGTCCCTTCACCCCCATCCGCGTCGGCGCAACCGTCGGCCTCCGGGCGTTAGGTGTTGATGCATTTAATCGCATTCTCCAGGGCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGTTGTTACTGTCATCGACGGAACTAAAGTTTACTGGAGAGTGAGTGGACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

152

Amino Acids

16.45

Weight (kDa)

8.98

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 25 - 142 2.3e-26 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 238
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 6 cut(s) 81, 90, 154, 183, 378, 387
AluI AGCT 6 cut(s) 81, 90, 154, 183, 378, 387
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 240, 304
ApeKI GCWGC 3 cut(s) 87, 90, 204
AspLEI GCGC 2 cut(s) 209, 296
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 2 cut(s) 174, 311
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 3 cut(s) 77, 99, 216
BccI CCATC 2 cut(s) 143, 290
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 2 cut(s) 174, 311
BcoDI GTCTC 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 2 cut(s) 145, 226
BisI GCNGC 3 cut(s) 88, 91, 205
BlsI GCNGC 3 cut(s) 89, 92, 206
Bme1390I CCNGG 3 cut(s) 174, 311, 347
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 3 cut(s) 174, 311, 347
BmsI GCATC 1 cut(s) 316
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 2 cut(s) 329, 454
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 174, 311
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 346
BsaXI ACNNNNNCTCC 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 4 cut(s) 38, 193, 237, 397
BseNI ACTGG 1 cut(s) 437
BseRI GAGGAG 3 cut(s) 37, 119, 221
BseXI GCAGC 3 cut(s) 77, 99, 216
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 242, 306
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 84, 174, 310
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 2 cut(s) 242, 306
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 145, 226
BspACI CCGC 1 cut(s) 286
BspANI GGCC 2 cut(s) 242, 306
BspCNI CTCAG 4 cut(s) 37, 192, 236, 396
BspFNI CGCG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 2 cut(s) 145, 226
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 301, 409
Bst6I CTCTTC 2 cut(s) 55, 161
BstDEI CTNAG 5 cut(s) 24, 179, 223, 258, 383
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 296
BstKTI GATC 2 cut(s) 148, 229
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 145, 226
BstMWI GCNNNNNNNGC 2 cut(s) 87, 384
BstNI CCWGG 1 cut(s) 347
BstPAI GACNNNNGTC 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 172, 309, 345
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 77, 99, 216
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 145, 226
BstYI RGATCY 2 cut(s) 145, 226
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 2 cut(s) 242, 306
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 2 cut(s) 209, 296
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 3 cut(s) 82, 257, 277
CviAII CATG 1 cut(s) 16
DdeI CTNAG 5 cut(s) 24, 179, 223, 258, 383
DpnI GATC 2 cut(s) 147, 228
DpnII GATC 2 cut(s) 145, 226
Eam1104I CTCTTC 2 cut(s) 55, 161
EarI CTCTTC 2 cut(s) 55, 161
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 88, 91, 205
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 3 cut(s) 88, 91, 205
GlaI GCGC 2 cut(s) 208, 295
GluI GCNGC 3 cut(s) 88, 91, 205
GsuI CTGGAG 2 cut(s) 329, 454
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 242, 306
HapII CCGG 3 cut(s) 84, 174, 310
HgaI GACGC 3 cut(s) 82, 257, 277
HhaI GCGC 2 cut(s) 209, 296
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 207, 294
HinP1I GCGC 2 cut(s) 207, 294
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 3 cut(s) 84, 174, 310
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 3 cut(s) 97, 430, 446
Hpy188I TCNGA 6 cut(s) 27, 33, 39, 55, 140, 226
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 3 cut(s) 97, 430, 446
Hpy99I CGWCG 3 cut(s) 293, 305, 419
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 301, 409
HpyCH4IV ACGT 2 cut(s) 12, 99
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 384
HpyF3I CTNAG 5 cut(s) 24, 179, 223, 258, 383
HpySE526I ACGT 2 cut(s) 12, 99
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 207, 294
Kzo9I GATC 2 cut(s) 145, 226
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 4 cut(s) 86, 188, 383, 392
LpnPI CCDG 9 cut(s) 97, 187, 227, 278, 323, 332, 359, 408, 418
Lsp1109I GCAGC 3 cut(s) 77, 99, 216
LweI GCATC 1 cut(s) 316
MaeII ACGT 2 cut(s) 12, 99
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 147, 228
MboI GATC 2 cut(s) 145, 226
MboII GAAGA 3 cut(s) 42, 94, 148
MflI RGATCY 2 cut(s) 145, 226
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 219
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 3 cut(s) 84, 174, 310
MspR9I CCNGG 3 cut(s) 174, 311, 347
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 87, 384
NciI CCSGG 2 cut(s) 174, 311
NdeII GATC 2 cut(s) 145, 226
NlaIII CATG 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 3 cut(s) 89, 92, 206
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 145, 226
PvuII CAGCTG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 88, 91, 205
Sau3AI GATC 2 cut(s) 145, 226
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 3 cut(s) 174, 311, 347
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 149, 365
SmoI CTYRAG 2 cut(s) 149, 365
SsiI CCGC 1 cut(s) 286
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 172, 309, 345
TaaI ACNGT 2 cut(s) 301, 409
TaiI ACGT 2 cut(s) 15, 102
TaqI TCGA 3 cut(s) 111, 150, 414
TfiI GAWTC 2 cut(s) 34, 40
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 3 cut(s) 87, 90, 204
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.