FvH4_7g31870

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001988
Physical Location & Seq
Reverse (-)
22996180 .. 22997361
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31870.t1

Sequence Viewer

Length: 579 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCATTCTCCGACTCCAAGACCTCCTACGCCGTCATCTTCGACGCCGGTAGCTCCGGCAGCCGCGTCCACGTCTTCTGCTTCGACCACAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGTGCCACCCTGTCGCTCTCAGATCTCTTCCACAAGGCCGAAGCCGCCGTTCCTAAGGACCTGTGTCCCTTCACCCCCGTCCGCGTCGGCGCAACCGCCGGCCTCCGGGCGTTAGGTGTTGATGTATCTAATCGCATTCTCCAGGCCGTTAGGGATTTTCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCAACGGAACTAAAGTTTACTGGAGGTGTATAATTGTCATGGAGAAACTTTATTTTGAGTTTACTACCCCCAGTAAAAGTTTACTAGGGGTAGTAAACTTTACTAGTGTGTATTATGGTCTTGAAAATACTGTTTTGCAAGTTTACTACCCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

193

Amino Acids

21.19

Weight (kDa)

8.4

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 18 - 145 1.9e-33 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 108, 297
AciI CCGC 4 cut(s) 106, 258, 295, 309
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 1 cut(s) 545
AhlI ACTAGT 1 cut(s) 524
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 5 cut(s) 96, 163, 192, 387, 396
AluI AGCT 5 cut(s) 96, 163, 192, 387, 396
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 3 cut(s) 249, 313, 357
ApeKI GCWGC 1 cut(s) 102
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 2 cut(s) 183, 320
AsuHPI GGTGA 1 cut(s) 277
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 267
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 59, 245, 344
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 2 cut(s) 183, 320
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 2 cut(s) 506, 525
BglII AGATCT 2 cut(s) 154, 235
BisI GCNGC 3 cut(s) 103, 106, 258
BlsI GCNGC 3 cut(s) 104, 107, 259
Bme1390I CCNGG 3 cut(s) 183, 320, 356
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 3 cut(s) 183, 320, 356
BmrI ACTGGG 2 cut(s) 486, 568
BmsI GCATC 1 cut(s) 397
BmuI ACTGGG 2 cut(s) 486, 568
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 3 cut(s) 155, 338, 463
Bpu10I CCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 183, 320
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 2 cut(s) 89, 311
Bse1I ACTGG 3 cut(s) 446, 492, 574
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 202, 246, 406
BseNI ACTGG 3 cut(s) 446, 492, 574
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 108, 297
BshFI GGCC 3 cut(s) 251, 315, 359
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 5 cut(s) 90, 99, 183, 312, 319
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 264
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 3 cut(s) 251, 315, 359
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 154, 235
BspACI CCGC 4 cut(s) 106, 258, 295, 309
BspANI GGCC 3 cut(s) 251, 315, 359
BspCNI CTCAG 3 cut(s) 201, 245, 405
BspFNI CGCG 2 cut(s) 108, 297
BspQI GCTCTTC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 89, 311
BsrI ACTGG 3 cut(s) 446, 492, 574
BssAI RCCGGY 2 cut(s) 89, 311
BssMI GATC 2 cut(s) 154, 235
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 418, 553
Bst6I CTCTTC 2 cut(s) 170, 245
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 4 cut(s) 188, 232, 267, 392
BstFNI CGCG 2 cut(s) 108, 297
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 157, 238
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 154, 235
BstMWI GCNNNNNNNGC 3 cut(s) 102, 257, 393
BstNI CCWGG 1 cut(s) 356
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 181, 318, 354
BstUI CGCG 2 cut(s) 108, 297
BstV1I GCAGC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 154, 235
BstYI RGATCY 2 cut(s) 154, 235
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 3 cut(s) 251, 315, 359
BtrI CACGTC 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 89, 311
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 3 cut(s) 95, 97, 286
CviAII CATG 2 cut(s) 16, 460
DdeI CTNAG 4 cut(s) 188, 232, 267, 392
DpnI GATC 2 cut(s) 156, 237
DpnII GATC 2 cut(s) 154, 235
Eam1104I CTCTTC 2 cut(s) 170, 245
EarI CTCTTC 2 cut(s) 170, 245
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 2 cut(s) 19, 463
FaiI YATR 4 cut(s) 17, 452, 461, 537
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 15, 459
Fnu4HI GCNGC 3 cut(s) 103, 106, 258
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 103, 106, 258
FspBI CTAG 2 cut(s) 506, 525
GlaI GCGC 1 cut(s) 304
GluI GCNGC 3 cut(s) 103, 106, 258
GsuI CTGGAG 3 cut(s) 155, 338, 463
HaeIII GGCC 3 cut(s) 251, 315, 359
HapII CCGG 5 cut(s) 90, 99, 183, 312, 319
HgaI GACGC 3 cut(s) 95, 97, 286
HhaI GCGC 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 19, 463
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 5 cut(s) 90, 99, 183, 312, 319
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 6 cut(s) 112, 439, 483, 503, 517, 565
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 149, 235
Hpy188III TCNNGA 3 cut(s) 158, 172, 542
Hpy8I GTNNAC 6 cut(s) 112, 439, 483, 503, 517, 565
Hpy99I CGWCG 2 cut(s) 89, 302
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 418, 553
HpyCH4IV ACGT 2 cut(s) 12, 114
HpyCH4V TGCA 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 257, 393
HpyF3I CTNAG 4 cut(s) 188, 232, 267, 392
HpySE526I ACGT 2 cut(s) 12, 114
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 19, 463
HspAI GCGC 1 cut(s) 303
KroI GCCGGC 1 cut(s) 311
KroNI GCCGGC 1 cut(s) 313
Kzo9I GATC 2 cut(s) 154, 235
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 4 cut(s) 101, 197, 392, 401
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 397
MaeI CTAG 2 cut(s) 506, 525
MaeII ACGT 2 cut(s) 12, 114
MaeIII GTNAC 1 cut(s) 412
MalI GATC 2 cut(s) 156, 237
MboI GATC 2 cut(s) 154, 235
MboII GAAGA 4 cut(s) 73, 109, 157, 232
MflI RGATCY 2 cut(s) 154, 235
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 453
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 228
MroNI GCCGGC 1 cut(s) 311
MspI CCGG 5 cut(s) 90, 99, 183, 312, 319
MspR9I CCNGG 3 cut(s) 183, 320, 356
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 2 cut(s) 108, 297
MwoI GCNNNNNNNGC 3 cut(s) 102, 257, 393
NaeI GCCGGC 1 cut(s) 313
NciI CCSGG 2 cut(s) 183, 320
NdeII GATC 2 cut(s) 154, 235
NgoMIV GCCGGC 1 cut(s) 311
NlaIII CATG 2 cut(s) 19, 463
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 170
PctI GAATGC 1 cut(s) 348
PdiI GCCGGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 3 cut(s) 104, 107, 259
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 2 cut(s) 154, 235
SacI GAGCTC 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 170
SatI GCNGC 3 cut(s) 103, 106, 258
Sau3AI GATC 2 cut(s) 154, 235
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 3 cut(s) 183, 320, 356
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 1 cut(s) 397
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 158, 374
SmoI CTYRAG 2 cut(s) 158, 374
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 1 cut(s) 453
SsiI CCGC 4 cut(s) 106, 258, 295, 309
SspMI CTAG 2 cut(s) 506, 525
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 181, 318, 354
TaaI ACNGT 2 cut(s) 418, 553
TaiI ACGT 2 cut(s) 15, 117
TaqI TCGA 3 cut(s) 84, 126, 159
TasI AATT 1 cut(s) 453
TauI GCSGC 2 cut(s) 108, 260
TfiI GAWTC 2 cut(s) 34, 40
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 158
XspI CTAG 2 cut(s) 506, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.