FvH4_3g22560

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001988
Physical Location & Seq
Forward (+)
15554128 .. 15554562
435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22560.t1

Sequence Viewer

Length: 435 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCTGACTCCAAGACCTCCTACGCTGGCAGCTCCGGCAACTGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCTCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGCGCCGCCCTGTCGCTCTCAGATCTCCTCCACAAGGCCGAAGCCGCCGTTCCTAAGGACCTGCGTCCCTTCACCCCCGTCCGCGTCGGCGCAACCGTCGGCCTCCGGGCGTTAGGTGTTGATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCGACGGAACTAAAGTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

145

Amino Acids

15.43

Weight (kDa)

8.62

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 25 - 142 1.3e-26 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 273
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 210, 249, 286
AfiI CCNNNNNNNGG 1 cut(s) 238
AjiI CACGTC 1 cut(s) 100
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 6 cut(s) 81, 154, 172, 183, 378, 387
AluI AGCT 6 cut(s) 81, 154, 172, 183, 378, 387
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 3 cut(s) 240, 304, 348
ApeKI GCWGC 2 cut(s) 78, 204
AspLEI GCGC 2 cut(s) 209, 296
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 258
BanII GRGCYC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 383
BbvI GCAGC 2 cut(s) 90, 216
BccI CCATC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 236, 335
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 2 cut(s) 145, 226
BisI GCNGC 4 cut(s) 79, 205, 210, 249
BlsI GCNGC 4 cut(s) 80, 206, 211, 250
Bme1390I CCNGG 2 cut(s) 311, 347
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 311, 347
BmsI GCATC 3 cut(s) 316, 338, 388
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 2 cut(s) 146, 329
Bpu10I CCTNAGC 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 193, 237, 397
BseRI GAGGAG 4 cut(s) 37, 40, 119, 221
BseXI GCAGC 2 cut(s) 90, 216
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 242, 306, 350
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 84, 310
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 3 cut(s) 242, 306, 350
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 145, 226
BspACI CCGC 3 cut(s) 210, 249, 286
BspANI GGCC 3 cut(s) 242, 306, 350
BspCNI CTCAG 3 cut(s) 192, 236, 396
BspFNI CGCG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 182
BssMI GATC 2 cut(s) 145, 226
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 301, 409
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 179, 223, 258, 383
BstENI CCTNNNNNAGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 296
BstKTI GATC 2 cut(s) 148, 229
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 145, 226
BstMWI GCNNNNNNNGC 3 cut(s) 84, 248, 384
BstNI CCWGG 1 cut(s) 347
BstPAI GACNNNNGTC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 309, 345
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 90, 216
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 145, 226
BstYI RGATCY 2 cut(s) 145, 226
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 3 cut(s) 242, 306, 350
BtrI CACGTC 1 cut(s) 100
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 2 cut(s) 209, 296
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 3 cut(s) 82, 257, 277
CviAII CATG 1 cut(s) 16
DdeI CTNAG 4 cut(s) 179, 223, 258, 383
DpnI GATC 2 cut(s) 147, 228
DpnII GATC 2 cut(s) 145, 226
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 154
Eco81I CCTNAGG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 255
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 79, 205, 210, 249
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 79, 205, 210, 249
FspBI CTAG 1 cut(s) 433
GlaI GCGC 2 cut(s) 208, 295
GluI GCNGC 4 cut(s) 79, 205, 210, 249
GsuI CTGGAG 2 cut(s) 146, 329
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 242, 306, 350
HapII CCGG 2 cut(s) 84, 310
HgaI GACGC 3 cut(s) 82, 257, 277
HhaI GCGC 2 cut(s) 209, 296
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 207, 294
HinP1I GCGC 2 cut(s) 207, 294
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 2 cut(s) 84, 310
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 97, 430
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 140, 226
Hpy188III TCNNGA 2 cut(s) 149, 163
Hpy8I GTNNAC 2 cut(s) 97, 430
Hpy99I CGWCG 3 cut(s) 293, 305, 419
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 301, 409
HpyCH4IV ACGT 2 cut(s) 12, 99
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 248, 384
HpyF3I CTNAG 4 cut(s) 179, 223, 258, 383
HpySE526I ACGT 2 cut(s) 12, 99
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 207, 294
Kzo9I GATC 2 cut(s) 145, 226
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 4 cut(s) 86, 188, 383, 392
Lsp1109I GCAGC 2 cut(s) 90, 216
LweI GCATC 3 cut(s) 316, 338, 388
MaeI CTAG 1 cut(s) 433
MaeII ACGT 2 cut(s) 12, 99
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 147, 228
MboI GATC 2 cut(s) 145, 226
MboII GAAGA 2 cut(s) 94, 148
MflI RGATCY 2 cut(s) 145, 226
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 331
MspI CCGG 2 cut(s) 84, 310
MspR9I CCNGG 2 cut(s) 311, 347
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 84, 248, 384
NciI CCSGG 1 cut(s) 311
NdeII GATC 2 cut(s) 145, 226
NlaIII CATG 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 331
PaeR7I CTCGAG 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 4 cut(s) 80, 206, 211, 250
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 267
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 2 cut(s) 145, 226
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 161
SatI GCNGC 4 cut(s) 79, 205, 210, 249
Sau3AI GATC 2 cut(s) 145, 226
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 2 cut(s) 311, 347
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 3 cut(s) 316, 338, 388
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 149, 365
SmoI CTYRAG 2 cut(s) 149, 365
SsiI CCGC 3 cut(s) 210, 249, 286
SspMI CTAG 1 cut(s) 433
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 309, 345
TaaI ACNGT 2 cut(s) 301, 409
TaiI ACGT 2 cut(s) 15, 102
TaqI TCGA 3 cut(s) 111, 150, 414
TaqII GACCGA 1 cut(s) 164
TauI GCSGC 2 cut(s) 212, 251
TfiI GAWTC 2 cut(s) 34, 40
TseI GCWGC 2 cut(s) 78, 204
TspGWI ACGGA 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 262
XagI CCTNNNNNAGG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 433
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.