Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Forward (+)

11355982 .. 11357500

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCGGATCGGTTTCTGGGTTTGGTCTATTCAACCTGATCCGGGGATGGGTCTGCCTGATTGGGCTGCTGTGGTTCCGGCGGCGAGGTGCAGTTGGTCATTGGTGGAGGCTTGGGCCTGGACTGGGCTGGTTTTTTTGTTTATGAGGTGGTGGTCTGGAGGAGACGCGACCAGATGGGTGACGTTACGGTGGTGGGGGATGTGTTCTGGTGGGGATTGGCCGACGATGTTTGGTTGCCGGTGGTGGCGGTCTGGGCCTGGTGTGATGATTGGCGGTGTGCGCCGGTCAGCATGTGAGGCGGCGAGAGATGGTGTGCACCAATCTGTAAGGCCGACAATGGCTGCGGCGGTGGAGTCTGTAATTGTTGGTGATGTCGATGATGTTTCTGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.57

Weight (kDa)

6.54

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	7 cut(s)	4, 80, 247, 273, 299, 344, 347
AclWI	GGATC	2 cut(s)	14, 32
AcoI	YGGCCR	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	41, 47, 123
AgsI	TTSAA	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	116, 256
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	14, 32
AoxI	GGCC	4 cut(s)	114, 218, 254, 329
ApaLI	GTGCAC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	65, 341
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	114, 254
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	190, 380
BaeGI	GKGCMC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	52, 328
BccI	CCATC	3 cut(s)	40, 168, 302
BciT130I	CCWGG	2 cut(s)	118, 258
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	156
BisI	GCNGC	5 cut(s)	66, 81, 300, 342, 345
BlsI	GCNGC	5 cut(s)	67, 82, 301, 343, 346
Bme1390I	CCNGG	3 cut(s)	42, 118, 258
BmgT120I	GGNCC	2 cut(s)	114, 254
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	3 cut(s)	42, 118, 258
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 47, 123
Bse118I	RCCGGY	2 cut(s)	237, 282
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	118, 258
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	51, 204
BseLI	CCNNNNNNNGG	3 cut(s)	41, 47, 123
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	52, 328
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	4 cut(s)	116, 220, 256, 331
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	41, 77, 238, 283
BslI	CCNNNNNNNGG	3 cut(s)	41, 47, 123
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	116, 220, 256, 331
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	6, 37
BspACI	CCGC	7 cut(s)	4, 80, 247, 273, 299, 344, 347
BspANI	GGCC	4 cut(s)	116, 220, 256, 331
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	14, 32
BsrFI	RCCGGY	2 cut(s)	237, 282
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	2 cut(s)	237, 282
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	6, 37
Bst2UI	CCWGG	2 cut(s)	118, 258
Bst4CI	ACNGT	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	51, 204
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	9, 40
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	2 cut(s)	6, 37
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 279, 296
BstNI	CCWGG	2 cut(s)	118, 258
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	40, 116, 256
BstSLI	GKGCMC	1 cut(s)	318
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	52, 328
BsuRI	GGCC	4 cut(s)	116, 220, 256, 331
BtsCI	GGATG	2 cut(s)	51, 204
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	2 cut(s)	237, 282
Cfr13I	GGNCC	2 cut(s)	114, 254
CseI	GACGC	1 cut(s)	173
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	8 cut(s)	65, 110, 116, 127, 220, 256, 331, 341
CviKI_1	RGCY	8 cut(s)	65, 110, 116, 127, 220, 256, 331, 341
DpnI	GATC	2 cut(s)	8, 39
DpnII	GATC	2 cut(s)	6, 37
EaeI	YGGCCR	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	116, 256
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	1 cut(s)	294
FaiI	YATR	2 cut(s)	143, 292
FatI	CATG	1 cut(s)	290
Fnu4HI	GCNGC	5 cut(s)	66, 81, 300, 342, 345
FokI	GGATG	2 cut(s)	58, 211
Fsp4HI	GCNGC	5 cut(s)	66, 81, 300, 342, 345
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	5 cut(s)	66, 81, 300, 342, 345
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	116, 220, 256, 331
HapII	CCGG	4 cut(s)	41, 77, 238, 283
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	294
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	4 cut(s)	41, 77, 238, 283
HphI	GGTGA	2 cut(s)	190, 380
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	90, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 279, 296
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	294
HspAI	GCGC	1 cut(s)	280
Kzo9I	GATC	2 cut(s)	6, 37
Lsp1109I	GCAGC	2 cut(s)	52, 328
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	178, 183
MalI	GATC	2 cut(s)	8, 39
MboI	GATC	2 cut(s)	6, 37
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	78, 100, 138, 152, 289
MspI	CCGG	4 cut(s)	41, 77, 238, 283
MspR9I	CCNGG	3 cut(s)	42, 118, 258
MvaI	CCWGG	2 cut(s)	118, 258
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	253, 279, 296
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	6, 37
NlaIII	CATG	1 cut(s)	294
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	67, 82, 301, 343, 346
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	116, 256
PspGI	CCWGG	2 cut(s)	116, 256
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	114, 254
SatI	GCNGC	5 cut(s)	66, 81, 300, 342, 345
Sau3AI	GATC	2 cut(s)	6, 37
Sau96I	GGNCC	2 cut(s)	114, 254
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	42, 118, 258
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	4 cut(s)	37, 89, 149, 185
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	7 cut(s)	4, 80, 247, 273, 299, 344, 347
StyD4I	CCNGG	3 cut(s)	40, 116, 256
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	360
TauI	GCSGC	3 cut(s)	83, 302, 347
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	65, 341
Tsp45I	GTSAC	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.