Rmu_sc0023103.1_g000001

Belongs to the GDA1 CD39 NTPase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023103.1
Physical Location & Seq
Reverse (-)
1020 .. 3131
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023103.1_g000001.1.cds

Sequence Viewer

Length: 1473 bp
ctggagcctgaggggaagcagatccgttacagatcgccttcgtcggccgaactcctcgaatctcaggccaattctcccccctccgatcactcccaaatgctgaaacgtcctcccagagggagctccgactccctctccgacaagctctacaagtaccggagcctcctcctcctcgtctccgtccctctcctcctcctgaccacgctcctctacctcaccccctcctctcgcattctccttcagactcccgcttccacctcctacgccgtcatcttcgacgccggcagctccggcagccgcgtccacgtcttctctttcgaccgcaacctcaacctcctccccatcggcaaagatctcgagctcttcattcagaaaaagcccggcctcagctcctacgcagccgatccccgcagcgccgccaagtcgctcaccgatctcctccagaaggcggaggccgccgttccccaagacctccgtcccttcacccccgtccgcgtcggcgcaaccgccggcctgagagcgttggggactgatgcttccaatcgcattcttcaggccgttagggatttgctgaaacaaacaagctccctcaactccgcccctgattctgttactgtcatcgatggaactcaggagggttcattccagtgggtgactatcaactatcttctaggcaatttggggaagcaatattccgatacggttggggtagttgatctcgggggtggatctgttcaaatggcttatgctatctcagacgcagatgctgcaaaggcacctaagactgaggacggcgaggattcgtatgtaaggaaaatgtctcttaaaggaactaattataacctctatgttcacagttatctgcgttacgggttactagcagctcgagcagagattttgaaggtttctgaagactctggcaacccctgtattttagatggatataatggttcttacaaatatggaggagaatcttttaaagcatcagcttcctcatctggatcaagcctagaagggtgcaggatggttgctctgaaggcactaaaagcaaacgaagagacatgtacacacatgaaatgcacatttggcggggtatggaatggtggaggaggggatggactaaagaacctttttgttgcctcgtttttctttgacagagctgctgaggctggttttgttaacccaaacgaacctgttgccaaagttcgccctggacactttgacgaggcagctaagcgtgcttgccaaactaaacttgaggatgccaaatccacgtatccaaatgttgaagaggacaacctgccttacttgtgcatggatcttgtttaccagtttacattgcttgtagatggatttggtctagatccatggcaagagattacattggtgaagaaagttaaatataataacgccttggttgaagcggcatggccactaggcagtgccatagaagcggtttcctcattaaattga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

490

Amino Acids

52.95

Weight (kDa)

6.08

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
Acc36I ACCTGC 1 cut(s) 1308
AccB1I GGYRCC 1 cut(s) 775
AccII CGCG 2 cut(s) 300, 495
AclWI GGATC 6 cut(s) 16, 398, 736, 1009, 1326, 1358
AcoI YGGCCR 2 cut(s) 45, 1430
AcuI CTGAAG 4 cut(s) 224, 536, 930, 1055
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 2 cut(s) 155, 1066
AfiI CCNNNNNNNGG 3 cut(s) 116, 445, 448
AflIII ACRYGT 1 cut(s) 1061
AgsI TTSAA 4 cut(s) 737, 901, 1289, 1421
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 1210
Alw21I GWGCWC 2 cut(s) 125, 363
Alw26I GTCTC 3 cut(s) 181, 825, 1052
AlwI GGATC 6 cut(s) 16, 398, 736, 1009, 1326, 1358
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 3 cut(s) 356, 719, 885
AoxI GGCC 7 cut(s) 45, 66, 382, 453, 511, 555, 1430
ApeKI GCWGC 8 cut(s) 285, 294, 398, 411, 767, 881, 1160, 1229
AspLEI GCGC 2 cut(s) 416, 503
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 5 cut(s) 208, 421, 475, 664, 1399
AvaI CYCGRG 3 cut(s) 356, 719, 885
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 1432
BanI GGYRCC 1 cut(s) 775
BanII GRGCYC 2 cut(s) 125, 363
BbsI GAAGAC 2 cut(s) 301, 918
Bbv12I GWGCWC 2 cut(s) 125, 363
BbvCI CCTCAGC 2 cut(s) 386, 1164
BbvI GCAGC 8 cut(s) 297, 306, 410, 423, 754, 893, 1147, 1241
BccI CCATC 6 cut(s) 350, 617, 932, 1018, 1109, 1343
BceAI ACGGC 4 cut(s) 251, 443, 542, 808
BcgI CGANNNNNNTGC 4 cut(s) 337, 371, 1178, 1212
BciT130I CCWGG 1 cut(s) 1212
BciVI GTATCC 1 cut(s) 1287
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 3 cut(s) 181, 825, 1052
BfaI CTAG 5 cut(s) 671, 878, 1010, 1361, 1436
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 1287
BglII AGATCT 1 cut(s) 352
BlpI GCTNAGC 1 cut(s) 1233
Bme1390I CCNGG 2 cut(s) 381, 1212
BmeT110I CYCGRG 3 cut(s) 356, 719, 885
BmgBI CACGTC 1 cut(s) 307
BmiI GGNNCC 3 cut(s) 6, 161, 777
BmrFI CCNGG 2 cut(s) 381, 1212
BmsI GCATC 4 cut(s) 523, 754, 992, 1252
BoxI GACNNNNGTC 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 301, 918
BpmI CTGGAG 2 cut(s) 23, 425
Bpu10I CCTNAGC 2 cut(s) 386, 1164
Bpu1102I GCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 1 cut(s) 1277
BpuMI CCSGG 1 cut(s) 381
Bsa29I ATCGAT 1 cut(s) 621
BsaAI YACGTR 1 cut(s) 1275
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 3 cut(s) 1210, 1367, 1413
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 445, 448
Bse118I RCCGGY 2 cut(s) 281, 509
Bse1I ACTGG 2 cut(s) 646, 1330
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 1337
BseBI CCWGG 1 cut(s) 1212
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 3 cut(s) 1210, 1367, 1413
BseGI GGATG 3 cut(s) 1029, 1120, 1267
BseLI CCNNNNNNNGG 3 cut(s) 116, 445, 448
BseMI GCAATG 1 cut(s) 1337
BseMII CTCAG 7 cut(s) 77, 400, 506, 644, 768, 777, 1155
BseNI ACTGG 2 cut(s) 646, 1330
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 8 cut(s) 297, 306, 410, 423, 754, 893, 1147, 1241
BsgI GTGCAG 1 cut(s) 1039
Bsh1236I CGCG 2 cut(s) 300, 495
Bsh1285I CGRYCG 2 cut(s) 48, 322
BshFI GGCC 7 cut(s) 47, 68, 384, 455, 513, 557, 1432
BshNI GGYRCC 1 cut(s) 775
BshVI ATCGAT 1 cut(s) 621
BsiEI CGRYCG 2 cut(s) 48, 322
BsiHKAI GWGCWC 2 cut(s) 125, 363
BsiHKCI CYCGRG 3 cut(s) 356, 719, 885
BsiSI CCGG 5 cut(s) 157, 282, 291, 381, 510
BslFI GGGAC 3 cut(s) 167, 462, 541
BslI CCNNNNNNNGG 3 cut(s) 116, 445, 448
BsmAI GTCTC 3 cut(s) 181, 825, 1052
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 167, 462, 541
BsmI GAATGC 2 cut(s) 231, 546
BsnI GGCC 7 cut(s) 47, 68, 384, 455, 513, 557, 1432
BsoBI CYCGRG 3 cut(s) 356, 719, 885
Bsp1286I GDGCHC 2 cut(s) 125, 363
Bsp1407I TGTACA 1 cut(s) 1064
Bsp1720I GCTNAGC 1 cut(s) 1233
Bsp19I CCATGG 1 cut(s) 1367
BspANI GGCC 7 cut(s) 47, 68, 384, 455, 513, 557, 1432
BspCNI CTCAG 7 cut(s) 76, 399, 507, 643, 767, 778, 1156
BspDI ATCGAT 1 cut(s) 621
BspFNI CGCG 2 cut(s) 300, 495
BspLI GGNNCC 3 cut(s) 6, 161, 777
BspMI ACCTGC 1 cut(s) 1308
BspPI GGATC 6 cut(s) 16, 398, 736, 1009, 1326, 1358
BspQI GCTCTTC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 775
BsrDI GCAATG 1 cut(s) 1337
BsrFI RCCGGY 2 cut(s) 281, 509
BsrGI TGTACA 1 cut(s) 1064
BsrI ACTGG 2 cut(s) 646, 1330
BssAI RCCGGY 2 cut(s) 281, 509
BssECI CCNNGG 3 cut(s) 1210, 1367, 1413
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 2 cut(s) 1367, 1413
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 3 cut(s) 616, 703, 857
Bst6I CTCTTC 3 cut(s) 368, 1050, 1284
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 1275
BstC8I GCNNGC 4 cut(s) 283, 511, 1239, 1243
BstDSI CCRYGG 1 cut(s) 1367
BstENI CCTNNNNNAGG 2 cut(s) 114, 443
BstF5I GGATG 3 cut(s) 1029, 1120, 1267
BstFNI CGCG 2 cut(s) 300, 495
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 2 cut(s) 416, 503
BstMAI GTCTC 3 cut(s) 181, 825, 1052
BstMCI CGRYCG 2 cut(s) 48, 322
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 1 cut(s) 1065
BstPAI GACNNNNGTC 1 cut(s) 474
BstSCI CCNGG 2 cut(s) 379, 1210
BstUI CGCG 2 cut(s) 300, 495
BstV1I GCAGC 8 cut(s) 297, 306, 410, 423, 754, 893, 1147, 1241
BstV2I GAAGAC 2 cut(s) 301, 918
BstX2I RGATCY 5 cut(s) 21, 352, 728, 1318, 1363
BstYI RGATCY 5 cut(s) 21, 352, 728, 1318, 1363
BstZI CGGCCG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 621
Bsu36I CCTNAGG 1 cut(s) 9
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 7 cut(s) 47, 68, 384, 455, 513, 557, 1432
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 1367
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 1029, 1120, 1267
BtsI GCAGTG 1 cut(s) 1447
BtsIMutI CAGTG 2 cut(s) 653, 1447
BveI ACCTGC 1 cut(s) 1308
Cac8I GCNNGC 4 cut(s) 283, 511, 1239, 1243
CaiI CAGNNNCTG 1 cut(s) 767
CfoI GCGC 2 cut(s) 416, 503
Cfr10I RCCGGY 2 cut(s) 281, 509
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 4 cut(s) 287, 289, 484, 767
Csp6I GTAC 2 cut(s) 154, 1065
CviAII CATG 5 cut(s) 1062, 1072, 1315, 1368, 1428
CviQI GTAC 2 cut(s) 154, 1065
DraI TTTAAA 1 cut(s) 979
EaeI YGGCCR 2 cut(s) 45, 1430
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 368, 1050, 1284
EarI CTCTTC 3 cut(s) 368, 1050, 1284
EciI GGCGGA 2 cut(s) 464, 586
Ecl136II GAGCTC 2 cut(s) 123, 361
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 1367, 1413
Eco24I GRGCYC 2 cut(s) 125, 363
Eco52I CGGCCG 1 cut(s) 45
Eco53kI GAGCTC 2 cut(s) 123, 361
Eco57I CTGAAG 4 cut(s) 224, 536, 930, 1055
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 3 cut(s) 356, 719, 885
EcoICRI GAGCTC 2 cut(s) 123, 361
EcoNI CCTNNNNNAGG 2 cut(s) 114, 443
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 1367, 1413
EcoT38I GRGCYC 2 cut(s) 125, 363
ErhI CCWWGG 2 cut(s) 1367, 1413
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 5 cut(s) 1065, 1075, 1318, 1371, 1431
FaqI GGGAC 3 cut(s) 167, 462, 541
FatI CATG 5 cut(s) 1061, 1071, 1314, 1367, 1427
FauI CCCGC 3 cut(s) 256, 416, 1082
FokI GGATG 3 cut(s) 1036, 1127, 1274
FriOI GRGCYC 2 cut(s) 125, 363
FspBI CTAG 5 cut(s) 671, 878, 1010, 1361, 1436
GlaI GCGC 2 cut(s) 415, 502
GsuI CTGGAG 2 cut(s) 23, 425
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 7 cut(s) 47, 68, 384, 455, 513, 557, 1432
HapII CCGG 5 cut(s) 157, 282, 291, 381, 510
HgaI GACGC 4 cut(s) 287, 289, 484, 767
HhaI GCGC 2 cut(s) 416, 503
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 5 cut(s) 1065, 1075, 1318, 1371, 1431
Hin6I GCGC 2 cut(s) 414, 501
HinP1I GCGC 2 cut(s) 414, 501
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HinfI GANTC 7 cut(s) 59, 128, 244, 605, 800, 914, 971
HpaI GTTAAC 1 cut(s) 1180
HpaII CCGG 5 cut(s) 157, 282, 291, 381, 510
HphI GGTGA 5 cut(s) 208, 421, 475, 664, 1399
Hpy166II GTNNAC 6 cut(s) 304, 853, 1067, 1180, 1327, 1335
Hpy188I TCNGA 9 cut(s) 85, 127, 139, 243, 372, 697, 757, 910, 1035
Hpy188III TCNNGA 6 cut(s) 196, 356, 442, 632, 999, 1361
Hpy8I GTNNAC 6 cut(s) 304, 853, 1067, 1180, 1327, 1335
Hpy99I CGWCG 3 cut(s) 46, 281, 500
HpyAV CCTTC 7 cut(s) 48, 248, 439, 490, 895, 1007, 1030
HpyCH4III ACNGT 3 cut(s) 616, 703, 857
HpyCH4IV ACGT 3 cut(s) 106, 306, 1274
HpyCH4V TGCA 4 cut(s) 770, 1020, 1080, 1314
HpySE526I ACGT 3 cut(s) 106, 306, 1274
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 5 cut(s) 1065, 1075, 1318, 1371, 1431
HspAI GCGC 2 cut(s) 414, 501
KroI GCCGGC 2 cut(s) 281, 509
KroNI GCCGGC 2 cut(s) 283, 511
KspAI GTTAAC 1 cut(s) 1180
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 8 cut(s) 4, 120, 128, 159, 210, 293, 395, 590
Lsp1109I GCAGC 8 cut(s) 297, 306, 410, 423, 754, 893, 1147, 1241
LweI GCATC 4 cut(s) 523, 754, 992, 1252
MaeI CTAG 5 cut(s) 671, 878, 1010, 1361, 1436
MaeII ACGT 3 cut(s) 106, 306, 1274
MaeIII GTNAC 5 cut(s) 26, 610, 652, 866, 873
MboII GAAGA 9 cut(s) 265, 301, 355, 542, 659, 923, 1067, 1301, 1402
MflI RGATCY 5 cut(s) 21, 352, 728, 1318, 1363
MhlI GDGCHC 2 cut(s) 125, 363
MlsI TGGCCA 1 cut(s) 1432
MluCI AATT 4 cut(s) 70, 676, 835, 1468
MluNI TGGCCA 1 cut(s) 1432
MlyI GAGTC 3 cut(s) 122, 238, 908
MmeI TCCRAC 2 cut(s) 150, 162
Mox20I TGGCCA 1 cut(s) 1432
MroNI GCCGGC 2 cut(s) 281, 509
MscI TGGCCA 1 cut(s) 1432
MseI TTAA 5 cut(s) 825, 978, 1179, 1398, 1466
MslI CAYNNNNRTG 1 cut(s) 646
Msp20I TGGCCA 1 cut(s) 1432
MspI CCGG 5 cut(s) 157, 282, 291, 381, 510
MspR9I CCNGG 2 cut(s) 381, 1212
Mva1269I GAATGC 2 cut(s) 231, 546
MvaI CCWGG 1 cut(s) 1212
MvnI CGCG 2 cut(s) 300, 495
NaeI GCCGGC 2 cut(s) 283, 511
NciI CCSGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 1367
NgoMIV GCCGGC 2 cut(s) 281, 509
NlaIII CATG 5 cut(s) 1065, 1075, 1318, 1371, 1431
NlaIV GGNNCC 3 cut(s) 6, 161, 777
NmuCI GTSAC 1 cut(s) 652
NspI RCATGY 1 cut(s) 1065
PaeR7I CTCGAG 2 cut(s) 356, 885
PciI ACATGT 1 cut(s) 1061
PciSI GCTCTTC 1 cut(s) 368
PctI GAATGC 2 cut(s) 231, 546
PdiI GCCGGC 2 cut(s) 283, 511
PfeI GAWTC 4 cut(s) 59, 605, 800, 971
PleI GAGTC 3 cut(s) 122, 238, 908
PpsI GAGTC 3 cut(s) 122, 238, 908
Ppu21I YACGTR 1 cut(s) 1275
PscI ACATGT 1 cut(s) 1061
PshAI GACNNNNGTC 1 cut(s) 474
PsiI TTATAA 1 cut(s) 840
Psp124BI GAGCTC 2 cut(s) 125, 363
Psp6I CCWGG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 3 cut(s) 6, 161, 777
PspXI VCTCGAGB 1 cut(s) 885
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 5 cut(s) 21, 352, 728, 1318, 1363
RsaI GTAC 2 cut(s) 155, 1066
RsaNI GTAC 2 cut(s) 154, 1065
RseI CAYNNNNRTG 1 cut(s) 646
SacI GAGCTC 2 cut(s) 125, 363
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 5 cut(s) 825, 978, 1179, 1398, 1466
SchI GAGTC 3 cut(s) 122, 238, 908
ScrFI CCNGG 2 cut(s) 381, 1212
SduI GDGCHC 2 cut(s) 125, 363
SfaNI GCATC 4 cut(s) 523, 754, 992, 1252
Sfr274I CTCGAG 2 cut(s) 356, 885
SlaI CTCGAG 2 cut(s) 356, 885
SmiMI CAYNNNNRTG 1 cut(s) 646
SmlI CTYRAG 3 cut(s) 356, 885, 1256
SmoI CTYRAG 3 cut(s) 356, 885, 1256
Sse9I AATT 4 cut(s) 70, 676, 835, 1468
SspI AATATT 1 cut(s) 692
SspMI CTAG 5 cut(s) 671, 878, 1010, 1361, 1436
SstI GAGCTC 2 cut(s) 125, 363
StyD4I CCNGG 2 cut(s) 379, 1210
StyI CCWWGG 2 cut(s) 1367, 1413
TaaI ACNGT 3 cut(s) 616, 703, 857
TaiI ACGT 3 cut(s) 109, 309, 1277
TaqI TCGA 6 cut(s) 57, 276, 318, 357, 621, 886
TasI AATT 4 cut(s) 70, 676, 835, 1468
TatI WGTACW 1 cut(s) 1064
TauI GCSGC 4 cut(s) 300, 419, 458, 1427
TfiI GAWTC 4 cut(s) 59, 605, 800, 971
Tru1I TTAA 5 cut(s) 825, 978, 1179, 1398, 1466
Tru9I TTAA 5 cut(s) 825, 978, 1179, 1398, 1466
TscAI CASTG 2 cut(s) 653, 1447
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 8 cut(s) 285, 294, 398, 411, 767, 881, 1160, 1229
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 3 cut(s) 355, 630, 1088
TspGWI ACGGA 3 cut(s) 14, 169, 464
TspRI CASTG 2 cut(s) 653, 1447
XagI CCTNNNNNAGG 2 cut(s) 114, 443
XbaI TCTAGA 1 cut(s) 1360
XceI RCATGY 1 cut(s) 1065
XhoI CTCGAG 2 cut(s) 356, 885
XspI CTAG 5 cut(s) 671, 878, 1010, 1361, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.