Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

23169052 .. 23169270

Gene Structure 219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32182.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGGTAGCTCCGGCAGCTGCGTCCACGTCTTTTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGCGCCGCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

73

Amino Acids

7.79

Weight (kDa)

6.8

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	25 - 71	2.9e-08	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	4 cut(s)	81, 90, 154, 183
AluI	AGCT	4 cut(s)	81, 90, 154, 183
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	87, 90, 204
AspLEI	GCGC	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	77, 99
BccI	CCATC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	210
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	4 cut(s)	88, 91, 205, 210
BlsI	GCNGC	4 cut(s)	89, 92, 206, 211
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bse118I	RCCGGY	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	193
BseRI	GAGGAG	3 cut(s)	37, 40, 119
BseXI	GCAGC	2 cut(s)	77, 99
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	75, 84, 174
BsmAI	GTCTC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	77, 99
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtrI	CACGTC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	5 cut(s)	81, 90, 154, 172, 183
CviKI_1	RGCY	5 cut(s)	81, 90, 154, 172, 183
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	88, 91, 205, 210
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	88, 91, 205, 210
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	88, 91, 205, 210
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	210
HapII	CCGG	3 cut(s)	75, 84, 174
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	28, 34, 40, 56
HpaII	CCGG	3 cut(s)	75, 84, 174
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	33, 39, 55, 140
Hpy188III	TCNNGA	2 cut(s)	149, 163
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	12, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	12, 99
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	145
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	86, 188
LpnPI	CCDG	5 cut(s)	38, 88, 97, 176, 187
Lsp1109I	GCAGC	2 cut(s)	77, 99
MaeII	ACGT	2 cut(s)	12, 99
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	22, 50
MmeI	TCCRAC	2 cut(s)	78, 219
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	3 cut(s)	75, 84, 174
MspR9I	CCNGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	19
PaeR7I	CTCGAG	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	34, 40
PkrI	GCNGC	4 cut(s)	89, 92, 206, 211
PleI	GAGTC	2 cut(s)	22, 50
PpsI	GAGTC	2 cut(s)	22, 50
Psp124BI	GAGCTC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	161
SatI	GCNGC	4 cut(s)	88, 91, 205, 210
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	22, 50
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	9 cut(s)	15, 68, 83, 92, 102, 123, 129, 156, 185
SfcI	CTRYAG	1 cut(s)	215
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	172
TaiI	ACGT	2 cut(s)	15, 102
TaqI	TCGA	2 cut(s)	111, 150
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	34, 40
TseI	GCWGC	3 cut(s)	87, 90, 204
XhoI	CTCGAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.