Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Forward (+)

5235172 .. 5238644

Gene Structure 3473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTCTTCTACGTCATGCCCTCCCAGACTCTGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCTGCTTCAACCACAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGCGCCACCCTGTCGCTCTCAGATCTCTTCCACAAGGCCGAAGCCGCCGTTCCTAAGGACCTGTGTCCCTTCACCCCCGTCCGCGTCGGCGCAACCGCCGGCCTCCGAGCGTTAGGTGTTGATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCGACGGAACTAAAGTTTACTGGAGTGAGACTCCGGCGATTTTCCGATCACCATCAATTTTCCGGCGACCGGTGACCGGAATCCGGCGGCCAGTGTCCGGTGACGGGAATCAGGCAACCGGTGTTCGGCGACCCGAATCCGGTGACCGGCACTGGTGTCCGGGTTCCTCCCGTCACATACTCGGTGAAGGCCAGAGCTACCAGACCCAACATGGCCAATCTCCCATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

218

Amino Acids

23.48

Weight (kDa)

9.47

Isoelectric Point (pI)

69.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	18 - 145	2.3e-34	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	108, 297
AciI	CCGC	5 cut(s)	106, 258, 295, 309, 508
AcoI	YGGCCR	2 cut(s)	509, 634
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	8 cut(s)	490, 497, 504, 518, 525, 546, 560, 567
AgeI	ACCGGT	2 cut(s)	490, 539
AgsI	TTSAA	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	1 cut(s)	630
AluBI	AGCT	6 cut(s)	96, 163, 192, 387, 396, 618
AluI	AGCT	6 cut(s)	96, 163, 192, 387, 396, 618
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	2 cut(s)	191, 443
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	6 cut(s)	249, 313, 357, 509, 610, 634
ApeKI	GCWGC	3 cut(s)	93, 102, 213
AsiGI	ACCGGT	2 cut(s)	490, 539
AspLEI	GCGC	2 cut(s)	218, 305
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	183, 582
AsuHPI	GGTGA	6 cut(s)	277, 462, 505, 533, 575, 617
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	105, 114, 225
BccI	CCATC	2 cut(s)	152, 481
BceAI	ACGGC	3 cut(s)	59, 245, 344
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	2 cut(s)	183, 582
BcoDI	GTCTC	2 cut(s)	191, 443
BfoI	RGCGCY	1 cut(s)	219
BglII	AGATCT	2 cut(s)	154, 235
BisI	GCNGC	6 cut(s)	94, 103, 106, 214, 258, 509
BlsI	GCNGC	6 cut(s)	95, 104, 107, 215, 259, 510
Bme1390I	CCNGG	3 cut(s)	183, 356, 582
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	3 cut(s)	183, 356, 582
BmsI	GCATC	3 cut(s)	325, 347, 397
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	3 cut(s)	155, 338, 463
Bpu10I	CCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	183, 582
BsaBI	GATNNNNATC	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	191
BsaWI	WCCGGW	5 cut(s)	490, 497, 518, 539, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	8 cut(s)	490, 497, 504, 518, 525, 546, 560, 567
Bse118I	RCCGGY	5 cut(s)	89, 311, 490, 539, 567
Bse1I	ACTGG	3 cut(s)	446, 512, 578
Bse21I	CCTNAGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	356
BseJI	GATNNNNATC	1 cut(s)	472
BseLI	CCNNNNNNNGG	8 cut(s)	490, 497, 504, 518, 525, 546, 560, 567
BseMII	CTCAG	3 cut(s)	202, 246, 406
BseNI	ACTGG	3 cut(s)	446, 512, 578
BseRI	GAGGAG	3 cut(s)	37, 40, 128
BseXI	GCAGC	3 cut(s)	105, 114, 225
Bsh1236I	CGCG	2 cut(s)	108, 297
Bsh1285I	CGRYCG	1 cut(s)	491
BshFI	GGCC	6 cut(s)	251, 315, 359, 511, 612, 636
BshTI	ACCGGT	2 cut(s)	490, 539
BsiEI	CGRYCG	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	8 cut(s)	490, 497, 504, 518, 525, 546, 560, 567
BsmAI	GTCTC	2 cut(s)	191, 443
BsmFI	GGGAC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	6 cut(s)	251, 315, 359, 511, 612, 636
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	154, 235, 467
BspACI	CCGC	5 cut(s)	106, 258, 295, 309, 508
BspANI	GGCC	6 cut(s)	251, 315, 359, 511, 612, 636
BspCNI	CTCAG	3 cut(s)	201, 245, 405
BspFNI	CGCG	2 cut(s)	108, 297
BspLI	GGNNCC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	191
BsrFI	RCCGGY	5 cut(s)	89, 311, 490, 539, 567
BsrI	ACTGG	3 cut(s)	446, 512, 578
BssAI	RCCGGY	5 cut(s)	89, 311, 490, 539, 567
BssMI	GATC	3 cut(s)	154, 235, 467
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	2 cut(s)	170, 245
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	91, 313
BstDEI	CTNAG	4 cut(s)	188, 232, 267, 392
BstEII	GGTNACC	2 cut(s)	493, 563
BstFNI	CGCG	2 cut(s)	108, 297
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 305
BstKTI	GATC	3 cut(s)	157, 238, 470
BstMAI	GTCTC	2 cut(s)	191, 443
BstMBI	GATC	3 cut(s)	154, 235, 467
BstMCI	CGRYCG	1 cut(s)	491
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 102, 257, 393
BstNI	CCWGG	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	276
BstPI	GGTNACC	2 cut(s)	493, 563
BstSCI	CCNGG	3 cut(s)	181, 354, 580
BstUI	CGCG	2 cut(s)	108, 297
BstV1I	GCAGC	3 cut(s)	105, 114, 225
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	154, 235
BstYI	RGATCY	2 cut(s)	154, 235
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	6 cut(s)	251, 315, 359, 511, 612, 636
BtrI	CACGTC	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	519, 571
Cac8I	GCNNGC	2 cut(s)	91, 313
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	2 cut(s)	218, 305
Cfr10I	RCCGGY	5 cut(s)	89, 311, 490, 539, 567
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	3 cut(s)	95, 97, 286
CspAI	ACCGGT	2 cut(s)	490, 539
CviAII	CATG	2 cut(s)	16, 632
DdeI	CTNAG	4 cut(s)	188, 232, 267, 392
DpnI	GATC	3 cut(s)	156, 237, 469
DpnII	GATC	3 cut(s)	154, 235, 467
EaeI	YGGCCR	2 cut(s)	509, 634
Eam1104I	CTCTTC	2 cut(s)	170, 245
EarI	CTCTTC	2 cut(s)	170, 245
Ecl136II	GAGCTC	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	163
Eco81I	CCTNAGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	158
Eco91I	GGTNACC	2 cut(s)	493, 563
EcoICRI	GAGCTC	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	271
EcoO65I	GGTNACC	2 cut(s)	493, 563
EcoRII	CCWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	2 cut(s)	19, 635
FaiI	YATR	4 cut(s)	17, 599, 633, 652
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	15, 631
Fnu4HI	GCNGC	6 cut(s)	94, 103, 106, 214, 258, 509
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	6 cut(s)	94, 103, 106, 214, 258, 509
GlaI	GCGC	2 cut(s)	217, 304
GluI	GCNGC	6 cut(s)	94, 103, 106, 214, 258, 509
GsuI	CTGGAG	3 cut(s)	155, 338, 463
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	251, 315, 359, 511, 612, 636
HgaI	GACGC	3 cut(s)	95, 97, 286
HhaI	GCGC	2 cut(s)	218, 305
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	19, 635
Hin6I	GCGC	2 cut(s)	216, 303
HinP1I	GCGC	2 cut(s)	216, 303
HinfI	GANTC	8 cut(s)	28, 34, 40, 56, 451, 501, 529, 557
HphI	GGTGA	6 cut(s)	277, 462, 505, 533, 575, 617
Hpy166II	GTNNAC	2 cut(s)	112, 439
Hpy188I	TCNGA	7 cut(s)	33, 39, 55, 149, 235, 320, 467
Hpy188III	TCNNGA	2 cut(s)	158, 172
Hpy8I	GTNNAC	2 cut(s)	112, 439
Hpy99I	CGWCG	3 cut(s)	89, 302, 428
HpyAV	CCTTC	2 cut(s)	292, 602
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	12, 114
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 102, 257, 393
HpyF3I	CTNAG	4 cut(s)	188, 232, 267, 392
HpySE526I	ACGT	2 cut(s)	12, 114
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	19, 635
HspAI	GCGC	2 cut(s)	216, 303
KroI	GCCGGC	2 cut(s)	89, 311
KroNI	GCCGGC	2 cut(s)	91, 313
Kzo9I	GATC	3 cut(s)	154, 235, 467
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	4 cut(s)	101, 197, 392, 401
Lsp1109I	GCAGC	3 cut(s)	105, 114, 225
LweI	GCATC	3 cut(s)	325, 347, 397
MaeII	ACGT	2 cut(s)	12, 114
MaeIII	GTNAC	5 cut(s)	412, 493, 521, 563, 593
MalI	GATC	3 cut(s)	156, 237, 469
MboI	GATC	3 cut(s)	154, 235, 467
MboII	GAAGA	4 cut(s)	73, 109, 157, 232
MflI	RGATCY	2 cut(s)	154, 235
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	636
MlyI	GAGTC	3 cut(s)	22, 50, 445
MmeI	TCCRAC	2 cut(s)	78, 228
Mox20I	TGGCCA	1 cut(s)	636
Mph1103I	ATGCAT	1 cut(s)	340
MroNI	GCCGGC	2 cut(s)	89, 311
MscI	TGGCCA	1 cut(s)	636
Msp20I	TGGCCA	1 cut(s)	636
MspR9I	CCNGG	3 cut(s)	183, 356, 582
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	2 cut(s)	108, 297
MwoI	GCNNNNNNNGC	4 cut(s)	99, 102, 257, 393
NaeI	GCCGGC	2 cut(s)	91, 313
NciI	CCSGG	2 cut(s)	183, 582
NdeII	GATC	3 cut(s)	154, 235, 467
NgoMIV	GCCGGC	2 cut(s)	89, 311
NlaIII	CATG	2 cut(s)	19, 635
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	4 cut(s)	493, 521, 563, 593
NsiI	ATGCAT	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	2 cut(s)	91, 313
PfeI	GAWTC	5 cut(s)	34, 40, 501, 529, 557
PinAI	ACCGGT	2 cut(s)	490, 539
PkrI	GCNGC	6 cut(s)	95, 104, 107, 215, 259, 510
PleI	GAGTC	3 cut(s)	22, 50, 445
PpsI	GAGTC	3 cut(s)	22, 50, 445
PpuMI	RGGWCCY	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	354
PspEI	GGTNACC	2 cut(s)	493, 563
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	271
PspPPI	RGGWCCY	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	154, 235
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	6 cut(s)	94, 103, 106, 214, 258, 509
Sau3AI	GATC	3 cut(s)	154, 235, 467
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	3 cut(s)	22, 50, 445
ScrFI	CCNGG	3 cut(s)	183, 356, 582
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	325, 347, 397
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	158, 374
SmoI	CTYRAG	2 cut(s)	158, 374
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	5 cut(s)	106, 258, 295, 309, 508
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	3 cut(s)	181, 354, 580
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	15, 117
TaqI	TCGA	3 cut(s)	84, 159, 423
TasI	AATT	1 cut(s)	477
TauI	GCSGC	3 cut(s)	108, 260, 511
TfiI	GAWTC	5 cut(s)	34, 40, 501, 529, 557
TscAI	CASTG	2 cut(s)	519, 578
TseFI	GTSAC	4 cut(s)	493, 521, 563, 593
TseI	GCWGC	3 cut(s)	93, 102, 213
Tsp45I	GTSAC	4 cut(s)	493, 521, 563, 593
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	519, 578
VpaK11BI	GGWCC	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XhoI	CTCGAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.