FvH4_2g05580

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001988
Physical Location & Seq
Reverse (-)
4579552 .. 4579881
330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05580.t1

Sequence Viewer

Length: 330 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGTCGTCATCTTCGACGCCGGCAGCTGTGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTTAGCTCCTACGCCTCCAACCCTCGCAGCGCCGCCCTGTCGCTCTCAGATCTCCTCCACAAGGCCGAAGCCACCATTCCTAAGGACCTGCGTCCCTTCACCCCCGTCCGCGTCGGCGCAACCACCGGCCTCCGGGCGTTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

110

Amino Acids

11.82

Weight (kDa)

7.84

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 18 - 108 9.8e-22 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AccII CGCG 1 cut(s) 294
AciI CCGC 2 cut(s) 216, 292
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 244, 315
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 3 cut(s) 96, 160, 189
AluI AGCT 3 cut(s) 96, 160, 189
Alw21I GWGCWC 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 2 cut(s) 246, 310
ApeKI GCWGC 2 cut(s) 93, 210
AspLEI GCGC 2 cut(s) 215, 302
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 180, 317
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 264
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 105, 222
BccI CCATC 1 cut(s) 149
BcnI CCSGG 2 cut(s) 180, 317
BfoI RGCGCY 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 279
BglII AGATCT 2 cut(s) 151, 232
BisI GCNGC 3 cut(s) 94, 211, 216
BlsI GCNGC 3 cut(s) 95, 212, 217
Bme1390I CCNGG 2 cut(s) 180, 317
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 180, 317
BoxI GACNNNNGTC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 180, 317
BsaHI GRCGYC 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 315
Bse118I RCCGGY 2 cut(s) 89, 308
Bse21I CCTNAGG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 244, 315
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 4 cut(s) 37, 40, 125, 227
BseXI GCAGC 2 cut(s) 105, 222
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 248, 312
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 4 cut(s) 90, 180, 309, 316
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 244, 315
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 2 cut(s) 248, 312
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 151, 232
BspACI CCGC 2 cut(s) 216, 292
BspANI GGCC 2 cut(s) 248, 312
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 89, 308
BssAI RCCGGY 2 cut(s) 89, 308
BssMI GATC 2 cut(s) 151, 232
BssNI GRCGYC 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 3 cut(s) 185, 229, 264
BstENI CCTNNNNNAGG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 302
BstKTI GATC 2 cut(s) 154, 235
BstMBI GATC 2 cut(s) 151, 232
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 178, 315
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 105, 222
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 151, 232
BstYI RGATCY 2 cut(s) 151, 232
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 248, 312
BtrI CACGTC 1 cut(s) 106
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 2 cut(s) 215, 302
Cfr10I RCCGGY 2 cut(s) 89, 308
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 3 cut(s) 95, 263, 283
CviAII CATG 1 cut(s) 16
CviJI RGCY 7 cut(s) 96, 160, 178, 189, 248, 254, 312
CviKI_1 RGCY 7 cut(s) 96, 160, 178, 189, 248, 254, 312
DdeI CTNAG 3 cut(s) 185, 229, 264
DpnI GATC 2 cut(s) 153, 234
DpnII GATC 2 cut(s) 151, 232
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 94, 211, 216
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 94, 211, 216
GlaI GCGC 2 cut(s) 214, 301
GluI GCNGC 3 cut(s) 94, 211, 216
GsuI CTGGAG 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 248, 312
HapII CCGG 4 cut(s) 90, 180, 309, 316
HgaI GACGC 3 cut(s) 95, 263, 283
HhaI GCGC 2 cut(s) 215, 302
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 213, 300
HinP1I GCGC 2 cut(s) 213, 300
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 4 cut(s) 90, 180, 309, 316
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 146, 232
Hpy188III TCNNGA 2 cut(s) 155, 169
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 77, 89, 299
HpyAV CCTTC 1 cut(s) 289
HpyCH4IV ACGT 3 cut(s) 12, 72, 105
HpyF3I CTNAG 3 cut(s) 185, 229, 264
HpySE526I ACGT 3 cut(s) 12, 72, 105
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 213, 300
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 151, 232
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 7 cut(s) 38, 103, 182, 193, 233, 284, 322
Lsp1109I GCAGC 2 cut(s) 105, 222
MaeII ACGT 3 cut(s) 12, 72, 105
MalI GATC 2 cut(s) 153, 234
MboI GATC 2 cut(s) 151, 232
MboII GAAGA 3 cut(s) 73, 100, 154
MflI RGATCY 2 cut(s) 151, 232
MhlI GDGCHC 1 cut(s) 162
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 225
MroNI GCCGGC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 4 cut(s) 90, 180, 309, 316
MspR9I CCNGG 2 cut(s) 180, 317
MvnI CGCG 1 cut(s) 294
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 180, 317
NdeII GATC 2 cut(s) 151, 232
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 19
PaeR7I CTCGAG 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 3 cut(s) 95, 212, 217
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 268
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 2 cut(s) 151, 232
PvuII CAGCTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 3 cut(s) 94, 211, 216
Sau3AI GATC 2 cut(s) 151, 232
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 2 cut(s) 180, 317
SduI GDGCHC 1 cut(s) 162
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SsiI CCGC 2 cut(s) 216, 292
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 178, 315
TaiI ACGT 3 cut(s) 15, 75, 108
TaqI TCGA 3 cut(s) 84, 117, 156
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 34, 40
TseI GCWGC 2 cut(s) 93, 210
VpaK11BI GGWCC 1 cut(s) 268
XagI CCTNNNNNAGG 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.