FvH4_2g09140

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001988
Physical Location & Seq
Reverse (-)
8068573 .. 8069780
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09140.t1

Sequence Viewer

Length: 585 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGTCATCTTCGACGCCGACAGCTCCGGCAGCCGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGCGTCACCTTGTCGCTCTCAGATCTCTTCCACAAGGCCGAAGCCGCCGTTCCTAAGGACCTGTGTCCCTTCACCCTCGTCCGCGTCGGCGCAACAGCCGGCCTCCGGGCGTTAGGTGTTGATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGAAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCGACGGAACTAAAGTTTACTGGAGGTGTATAATTGTCATGGAGAAACTTTATTTTGAGTTTACTACCCCCAGTAAAAGTTTACTAGGGGTAGTAAACTTTACTAGTGTGTATTATGGTCTTGAAAATACTGTTTTGCAAGTTTACTACCCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

195

Amino Acids

21.4

Weight (kDa)

7.71

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 18 - 147 3.7e-32 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 108, 303
AciI CCGC 3 cut(s) 106, 264, 301
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 1 cut(s) 551
AhlI ACTAGT 1 cut(s) 530
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 5 cut(s) 96, 169, 198, 393, 402
AluI AGCT 5 cut(s) 96, 169, 198, 393, 402
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 3 cut(s) 255, 319, 363
ApeKI GCWGC 2 cut(s) 102, 219
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 2 cut(s) 189, 326
AsuHPI GGTGA 2 cut(s) 217, 283
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 273
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 114, 231
BccI CCATC 1 cut(s) 158
BceAI ACGGC 3 cut(s) 59, 251, 350
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 2 cut(s) 189, 326
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 2 cut(s) 512, 531
BglII AGATCT 2 cut(s) 160, 241
BisI GCNGC 4 cut(s) 103, 106, 220, 264
BlsI GCNGC 4 cut(s) 104, 107, 221, 265
Bme1390I CCNGG 3 cut(s) 189, 326, 362
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 3 cut(s) 189, 326, 362
BmrI ACTGGG 2 cut(s) 492, 574
BmsI GCATC 3 cut(s) 331, 353, 403
BmuI ACTGGG 2 cut(s) 492, 574
BoxI GACNNNNGTC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 3 cut(s) 161, 344, 469
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 189, 326
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 452, 498, 580
Bse21I CCTNAGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 3 cut(s) 208, 252, 412
BseNI ACTGG 3 cut(s) 452, 498, 580
BseRI GAGGAG 3 cut(s) 37, 40, 134
BseXI GCAGC 2 cut(s) 114, 231
Bsh1236I CGCG 2 cut(s) 108, 303
BshFI GGCC 3 cut(s) 257, 321, 365
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 4 cut(s) 99, 189, 318, 325
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 3 cut(s) 257, 321, 365
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 160, 241
BspACI CCGC 3 cut(s) 106, 264, 301
BspANI GGCC 3 cut(s) 257, 321, 365
BspCNI CTCAG 3 cut(s) 207, 251, 411
BspFNI CGCG 2 cut(s) 108, 303
BspQI GCTCTTC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 3 cut(s) 452, 498, 580
BssAI RCCGGY 1 cut(s) 317
BssMI GATC 2 cut(s) 160, 241
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 424, 559
Bst6I CTCTTC 2 cut(s) 176, 251
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 4 cut(s) 194, 238, 273, 398
BstFNI CGCG 2 cut(s) 108, 303
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 2 cut(s) 163, 244
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 160, 241
BstMWI GCNNNNNNNGC 3 cut(s) 102, 263, 399
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 3 cut(s) 187, 324, 360
BstUI CGCG 2 cut(s) 108, 303
BstV1I GCAGC 2 cut(s) 114, 231
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 160, 241
BstYI RGATCY 2 cut(s) 160, 241
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 3 cut(s) 257, 321, 365
BtrI CACGTC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 4 cut(s) 95, 97, 211, 292
CviAII CATG 2 cut(s) 16, 466
DdeI CTNAG 4 cut(s) 194, 238, 273, 398
DpnI GATC 2 cut(s) 162, 243
DpnII GATC 2 cut(s) 160, 241
Eam1104I CTCTTC 2 cut(s) 176, 251
EarI CTCTTC 2 cut(s) 176, 251
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 2 cut(s) 19, 469
FaiI YATR 4 cut(s) 17, 458, 467, 543
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 15, 465
Fnu4HI GCNGC 4 cut(s) 103, 106, 220, 264
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 103, 106, 220, 264
FspBI CTAG 2 cut(s) 512, 531
GlaI GCGC 1 cut(s) 310
GluI GCNGC 4 cut(s) 103, 106, 220, 264
GsuI CTGGAG 3 cut(s) 161, 344, 469
HaeIII GGCC 3 cut(s) 257, 321, 365
HapII CCGG 4 cut(s) 99, 189, 318, 325
HgaI GACGC 4 cut(s) 95, 97, 211, 292
HhaI GCGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 19, 469
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 4 cut(s) 99, 189, 318, 325
HphI GGTGA 2 cut(s) 217, 283
Hpy166II GTNNAC 6 cut(s) 112, 445, 489, 509, 523, 571
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 155, 241
Hpy188III TCNNGA 4 cut(s) 164, 178, 382, 548
Hpy8I GTNNAC 6 cut(s) 112, 445, 489, 509, 523, 571
Hpy99I CGWCG 3 cut(s) 89, 308, 434
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 424, 559
HpyCH4IV ACGT 2 cut(s) 12, 114
HpyCH4V TGCA 2 cut(s) 344, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 263, 399
HpyF3I CTNAG 4 cut(s) 194, 238, 273, 398
HpySE526I ACGT 2 cut(s) 12, 114
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 19, 469
HspAI GCGC 1 cut(s) 309
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 160, 241
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 4 cut(s) 101, 203, 398, 407
Lsp1109I GCAGC 2 cut(s) 114, 231
LweI GCATC 3 cut(s) 331, 353, 403
MaeI CTAG 2 cut(s) 512, 531
MaeII ACGT 2 cut(s) 12, 114
MaeIII GTNAC 2 cut(s) 223, 418
MalI GATC 2 cut(s) 162, 243
MboI GATC 2 cut(s) 160, 241
MboII GAAGA 4 cut(s) 73, 109, 163, 238
MflI RGATCY 2 cut(s) 160, 241
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 459
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 234
Mph1103I ATGCAT 1 cut(s) 346
MroNI GCCGGC 1 cut(s) 317
MspI CCGG 4 cut(s) 99, 189, 318, 325
MspR9I CCNGG 3 cut(s) 189, 326, 362
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 108, 303
MwoI GCNNNNNNNGC 3 cut(s) 102, 263, 399
NaeI GCCGGC 1 cut(s) 319
NciI CCSGG 2 cut(s) 189, 326
NdeII GATC 2 cut(s) 160, 241
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 2 cut(s) 19, 469
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 176
PctI GAATGC 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 4 cut(s) 104, 107, 221, 265
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 2 cut(s) 160, 241
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 176
SatI GCNGC 4 cut(s) 103, 106, 220, 264
Sau3AI GATC 2 cut(s) 160, 241
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 3 cut(s) 189, 326, 362
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 3 cut(s) 331, 353, 403
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 164, 380
SmoI CTYRAG 2 cut(s) 164, 380
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 1 cut(s) 459
SsiI CCGC 3 cut(s) 106, 264, 301
SspMI CTAG 2 cut(s) 512, 531
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 187, 324, 360
TaaI ACNGT 2 cut(s) 424, 559
TaiI ACGT 2 cut(s) 15, 117
TaqI TCGA 4 cut(s) 84, 126, 165, 429
TasI AATT 1 cut(s) 459
TauI GCSGC 2 cut(s) 108, 266
TfiI GAWTC 2 cut(s) 34, 40
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 102, 219
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 2 cut(s) 512, 531
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.