Rroxscaffold_6G00426310

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001988
Physical Location & Seq
Forward (+)
47090174 .. 47092919
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426310.1

Sequence Viewer

Length: 729 bp
ATGGCTTATGCTATCTCAGACGCAGATGCTGCAAAGGCACCTAAGACTGAGGACGGCGAGGATTCGTATGTAAGGAAAATGTCTCTTAAAGGAACTAATTATAACCTCTATGTTCACAGTTATCTGCGTTACGGGTTACTAGCAGCTCGAGCAGAGATTTTAAAGGTTTCTGAAGACTCTGGCAACCCCTGTATTTTAGATGGATATAATGGTTCTTACAAATATGGAGGAGAATCTTTTAAAGCATCAGCTTCCTCATCTGGATCAAGCCTAGAAGAGTGCAGGAGGGTTGCTCTGAAGGCACTAAAAGCAAACGAAGAGACATGTACACACATGAAATGCACATTTGGCGGGGTATGGAATGGTGGAGGAGGGGATGGACTAAAGAACCTTTTTGTTGCCTCGTTTTTCTTTGACAGAGCTGCTGAGGCTGGTTTTGTTAACCCAAACGAACCTGTTGCCAAAGTTCGCCCTGGAAACTTTGGCGAGGCAGCTAAGCGTGCTTGCCAAACTAAACTTGAGGATGCCAAATCCACGTATCCAAATGTTGAAGAGGACAACCTGCCTTACTTGTGCATGGATCTTGTTTACCAGTTTACATTGCTTGTAGACGGATTTGGTCTAGATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATATAATAACGCCTTGGTTGAAGCGGCATGGCCACTAGGCAGTGCCATAGAAGCGGTTTCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

242

Amino Acids

26.27

Weight (kDa)

5.24

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 1 - 241 1.8e-41 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 37
AccI GTMKAC 1 cut(s) 609
AciI CCGC 3 cut(s) 351, 686, 716
AclWI GGATC 3 cut(s) 271, 588, 620
AcoI YGGCCR 1 cut(s) 692
AcuI CTGAAG 2 cut(s) 192, 317
AfaI GTAC 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 551, 683
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 4 cut(s) 146, 251, 422, 494
AluI AGCT 4 cut(s) 146, 251, 422, 494
Alw26I GTCTC 2 cut(s) 87, 314
AlwI GGATC 3 cut(s) 271, 588, 620
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 692
ApeKI GCWGC 4 cut(s) 29, 143, 422, 491
AsuHPI GGTGA 1 cut(s) 661
AvaI CYCGRG 1 cut(s) 147
BalI TGGCCA 1 cut(s) 694
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 16, 155, 409, 503
BccI CCATC 2 cut(s) 194, 371
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 1 cut(s) 474
BciVI GTATCC 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 87, 314
BfaI CTAG 4 cut(s) 140, 272, 623, 698
BfuAI ACCTGC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 5 cut(s) 30, 144, 423, 492, 687
BlpI GCTNAGC 1 cut(s) 495
BlsI GCNGC 5 cut(s) 31, 145, 424, 493, 688
Bme1390I CCNGG 1 cut(s) 474
BmeT110I CYCGRG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 3 cut(s) 16, 254, 514
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 277, 309
Bpu10I CCTNAGC 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 539
BsaAI YACGTR 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 472, 629, 675
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 599
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 3 cut(s) 472, 629, 675
BseGI GGATG 2 cut(s) 382, 529
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 3 cut(s) 30, 39, 417
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 2 cut(s) 243, 384
BseXI GCAGC 4 cut(s) 16, 155, 409, 503
BsgI GTGCAG 1 cut(s) 301
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 87, 314
BsnI GGCC 1 cut(s) 694
BsoBI CYCGRG 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 326
Bsp143I GATC 3 cut(s) 263, 580, 625
Bsp1720I GCTNAGC 1 cut(s) 495
Bsp19I CCATGG 1 cut(s) 629
BspACI CCGC 3 cut(s) 351, 686, 716
BspANI GGCC 1 cut(s) 694
BspCNI CTCAG 3 cut(s) 29, 40, 418
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 1 cut(s) 570
BspPI GGATC 3 cut(s) 271, 588, 620
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 326
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 3 cut(s) 472, 629, 675
BssMI GATC 3 cut(s) 263, 580, 625
BssT1I CCWWGG 2 cut(s) 629, 675
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 3 cut(s) 270, 312, 546
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 501, 505
BstDEI CTNAG 5 cut(s) 16, 42, 48, 426, 495
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 2 cut(s) 382, 529
BstKTI GATC 3 cut(s) 266, 583, 628
BstMAI GTCTC 2 cut(s) 87, 314
BstMBI GATC 3 cut(s) 263, 580, 625
BstMWI GCNNNNNNNGC 9 cut(s) 29, 35, 149, 299, 308, 348, 428, 500, 713
BstNI CCWGG 1 cut(s) 474
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 472
BstV1I GCAGC 4 cut(s) 16, 155, 409, 503
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 580, 625
BstYI RGATCY 2 cut(s) 580, 625
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 629
BtsCI GGATG 2 cut(s) 382, 529
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 709
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 501, 505
CaiI CAGNNNCTG 1 cut(s) 29
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 327
CviAII CATG 5 cut(s) 324, 334, 577, 630, 690
CviJI RGCY 8 cut(s) 5, 146, 251, 270, 422, 431, 494, 694
CviKI_1 RGCY 8 cut(s) 5, 146, 251, 270, 422, 431, 494, 694
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 5 cut(s) 16, 42, 48, 426, 495
DpnI GATC 3 cut(s) 265, 582, 627
DpnII GATC 3 cut(s) 263, 580, 625
DraI TTTAAA 2 cut(s) 162, 241
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 3 cut(s) 270, 312, 546
EarI CTCTTC 3 cut(s) 270, 312, 546
Eco130I CCWWGG 2 cut(s) 629, 675
Eco57I CTGAAG 2 cut(s) 192, 317
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 629, 675
ErhI CCWWGG 2 cut(s) 629, 675
FaeI CATG 5 cut(s) 327, 337, 580, 633, 693
FatI CATG 5 cut(s) 323, 333, 576, 629, 689
FauI CCCGC 1 cut(s) 344
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 5 cut(s) 30, 144, 423, 492, 687
FokI GGATG 2 cut(s) 389, 536
Fsp4HI GCNGC 5 cut(s) 30, 144, 423, 492, 687
FspBI CTAG 4 cut(s) 140, 272, 623, 698
GluI GCNGC 5 cut(s) 30, 144, 423, 492, 687
HaeIII GGCC 1 cut(s) 694
HgaI GACGC 1 cut(s) 29
Hin1II CATG 5 cut(s) 327, 337, 580, 633, 693
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 3 cut(s) 62, 176, 233
HpaI GTTAAC 1 cut(s) 442
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 6 cut(s) 115, 329, 442, 589, 597, 610
Hpy188I TCNGA 3 cut(s) 19, 172, 297
Hpy188III TCNNGA 2 cut(s) 261, 623
Hpy8I GTNNAC 6 cut(s) 115, 329, 442, 589, 597, 610
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 4 cut(s) 32, 282, 342, 576
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 35, 149, 299, 308, 348, 428, 500, 713
HpyF3I CTNAG 5 cut(s) 16, 42, 48, 426, 495
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 5 cut(s) 327, 337, 580, 633, 693
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 3 cut(s) 263, 580, 625
Lsp1109I GCAGC 4 cut(s) 16, 155, 409, 503
LweI GCATC 3 cut(s) 16, 254, 514
MaeI CTAG 4 cut(s) 140, 272, 623, 698
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 128, 135
MalI GATC 3 cut(s) 265, 582, 627
MboI GATC 3 cut(s) 263, 580, 625
MboII GAAGA 5 cut(s) 185, 287, 329, 563, 664
MflI RGATCY 2 cut(s) 580, 625
MlsI TGGCCA 1 cut(s) 694
MluCI AATT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 694
MlyI GAGTC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 694
MscI TGGCCA 1 cut(s) 694
MseI TTAA 5 cut(s) 87, 161, 240, 441, 660
Msp20I TGGCCA 1 cut(s) 694
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 9 cut(s) 29, 35, 149, 299, 308, 348, 428, 500, 713
NcoI CCATGG 1 cut(s) 629
NdeII GATC 3 cut(s) 263, 580, 625
NlaIII CATG 5 cut(s) 327, 337, 580, 633, 693
NlaIV GGNNCC 1 cut(s) 39
NspI RCATGY 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 147
PciI ACATGT 1 cut(s) 323
PfeI GAWTC 2 cut(s) 62, 233
PkrI GCNGC 5 cut(s) 31, 145, 424, 493, 688
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 537
PscI ACATGT 1 cut(s) 323
PsiI TTATAA 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 39
PspXI VCTCGAGB 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 29
PsuI RGATCY 2 cut(s) 580, 625
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SaqAI TTAA 5 cut(s) 87, 161, 240, 441, 660
SatI GCNGC 5 cut(s) 30, 144, 423, 492, 687
Sau3AI GATC 3 cut(s) 263, 580, 625
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 3 cut(s) 16, 254, 514
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 2 cut(s) 147, 518
SmoI CTYRAG 2 cut(s) 147, 518
Sse9I AATT 1 cut(s) 97
SsiI CCGC 3 cut(s) 351, 686, 716
SspMI CTAG 4 cut(s) 140, 272, 623, 698
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 2 cut(s) 629, 675
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 1 cut(s) 539
TaqI TCGA 1 cut(s) 148
TasI AATT 1 cut(s) 97
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 2 cut(s) 62, 233
Tru1I TTAA 5 cut(s) 87, 161, 240, 441, 660
Tru9I TTAA 5 cut(s) 87, 161, 240, 441, 660
TscAI CASTG 1 cut(s) 709
TseI GCWGC 4 cut(s) 29, 143, 422, 491
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 1 cut(s) 709
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 4 cut(s) 140, 272, 623, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.