Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

49300874 .. 49301489

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG430700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATTGGATTGGGATTGTTGATCCCAGCCCTCGTTTCAGACCCAAATCTGGATCCTAAGGGGAAGCAGATCCGTTACAGATCCCCTTCATCGGTCGAACTCCTCGAGTCTCAGACCAATTCTCCGCCCTTGGATCTCACTCAAATGCTCAAACATCCAGCCAGATGGAGCACTGACTCCCTCTCCGACAAGCTTTACAAGTACTGGAGCCTCCTCCTCTTCTCCGTCCATGTCTTCTCCTTTGACCGCGACCTCAATCTTCTCCCCACCGGCAAAGATCTCGAGCTCTTCCTTCAGACCAAGCCGGGGCTCAGCTTCTACGCCGCCGACCCTCGCAGCGCCTCCAAGTCACTCATTGATCTCCTCCAAAAGGTGGAGGCCGCAGTTCCCAAAGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

133

Amino Acids

14.88

Weight (kDa)

6.72

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	75 - 132	4.6e-07	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	125, 247, 324, 381
AclWI	GGATC	6 cut(s)	16, 47, 60, 64, 75, 141
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	5 cut(s)	49, 91, 306, 370, 373
AluBI	AGCT	3 cut(s)	193, 286, 315
AluI	AGCT	3 cut(s)	193, 286, 315
Alw21I	GWGCWC	2 cut(s)	173, 288
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	6 cut(s)	16, 47, 60, 64, 75, 141
Ama87I	CYCGRG	2 cut(s)	104, 281
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	341
AsuC2I	CCSGG	1 cut(s)	306
AvaI	CYCGRG	2 cut(s)	104, 281
AxyI	CCTNAGG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	288, 312
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	173, 288
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	342
BglII	AGATCT	2 cut(s)	277, 394
BisI	GCNGC	3 cut(s)	324, 337, 381
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	3 cut(s)	325, 338, 382
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	306
BmeT110I	CYCGRG	2 cut(s)	104, 281
BmiI	GGNNCC	2 cut(s)	54, 209
BmrFI	CCNGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	226
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	129, 305
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 167, 197
Bsc4I	CCNNNNNNNGG	5 cut(s)	49, 91, 306, 370, 373
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	129, 305
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	5 cut(s)	49, 91, 306, 370, 373
BseMII	CTCAG	2 cut(s)	125, 325
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	4 cut(s)	92, 203, 206, 353
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	173, 288
BsiHKCI	CYCGRG	2 cut(s)	104, 281
BsiSI	CCGG	2 cut(s)	270, 305
BslI	CCNNNNNNNGG	5 cut(s)	49, 91, 306, 370, 373
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	104, 281
Bsp1286I	GDGCHC	3 cut(s)	173, 288, 312
Bsp143I	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	4 cut(s)	125, 247, 324, 381
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	124, 324
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	54, 209
BspPI	GGATC	6 cut(s)	16, 47, 60, 64, 75, 141
BspQI	GCTCTTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	129, 305
BssMI	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
BssT1I	CCWWGG	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	224, 293
BstDEI	CTNAG	3 cut(s)	57, 111, 311
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	8 cut(s)	24, 55, 72, 83, 136, 280, 361, 397
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
BstMCI	CGRYCG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	304
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	348
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	6 cut(s)	52, 69, 80, 133, 277, 394
BstXI	CCANNNNNNTGG	1 cut(s)	165
BstYI	RGATCY	6 cut(s)	52, 69, 80, 133, 277, 394
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	171
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	9 cut(s)	29, 161, 193, 210, 286, 304, 310, 315, 380
CviKI_1	RGCY	9 cut(s)	29, 161, 193, 210, 286, 304, 310, 315, 380
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	57, 111, 311
DpnI	GATC	8 cut(s)	23, 54, 71, 82, 135, 279, 360, 396
DpnII	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
Eam1104I	CTCTTC	2 cut(s)	224, 293
EarI	CTCTTC	2 cut(s)	224, 293
EciI	GGCGGA	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	2 cut(s)	288, 312
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	2 cut(s)	104, 281
EcoICRI	GAGCTC	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	288, 312
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	233
FaiI	YATR	1 cut(s)	231
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	324, 337, 381
FokI	GGATG	1 cut(s)	141
FriOI	GRGCYC	2 cut(s)	288, 312
Fsp4HI	GCNGC	3 cut(s)	324, 337, 381
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	3 cut(s)	324, 337, 381
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	2 cut(s)	270, 305
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	107, 176
HpaII	CCGG	2 cut(s)	270, 305
Hpy188I	TCNGA	4 cut(s)	40, 114, 187, 297
Hpy188III	TCNNGA	2 cut(s)	50, 281
HpyAV	CCTTC	2 cut(s)	96, 302
HpyF3I	CTNAG	3 cut(s)	57, 111, 311
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	168, 207
LpnPI	CCDG	7 cut(s)	35, 39, 171, 175, 190, 283, 318
Lsp1109I	GCAGC	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	74, 348
MalI	GATC	8 cut(s)	23, 54, 71, 82, 135, 279, 360, 396
MboI	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
MboII	GAAGA	4 cut(s)	211, 226, 251, 280
MflI	RGATCY	6 cut(s)	52, 69, 80, 133, 277, 394
MhlI	GDGCHC	3 cut(s)	173, 288, 312
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	116, 170
MmeI	TCCRAC	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	2 cut(s)	270, 305
MspR9I	CCNGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	54, 209
NmuCI	GTSAC	1 cut(s)	348
PaeR7I	CTCGAG	2 cut(s)	104, 281
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	325, 338, 382
PleI	GAGTC	2 cut(s)	115, 170
PpsI	GAGTC	2 cut(s)	115, 170
Psp124BI	GAGCTC	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	54, 209
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	6 cut(s)	52, 69, 80, 133, 277, 394
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	293
SatI	GCNGC	3 cut(s)	324, 337, 381
Sau3AI	GATC	8 cut(s)	21, 52, 69, 80, 133, 277, 358, 394
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	2 cut(s)	116, 170
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	3 cut(s)	173, 288, 312
SetI	ASST	5 cut(s)	195, 255, 288, 317, 375
Sfr274I	CTCGAG	2 cut(s)	104, 281
SlaI	CTCGAG	2 cut(s)	104, 281
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	104, 281
SmoI	CTYRAG	2 cut(s)	104, 281
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	125, 247, 324, 381
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	129
TaqI	TCGA	3 cut(s)	96, 105, 282
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	326, 383
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	2 cut(s)	62, 214
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	373
XagI	CCTNNNNNAGG	1 cut(s)	368
XhoI	CTCGAG	2 cut(s)	104, 281
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.