FvH4_7g24690

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001988
Physical Location & Seq
Forward (+)
19040443 .. 19040850
408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24690.t1

Sequence Viewer

Length: 408 bp
ATGGTCTTCTACGTCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTTCTACGCTGTCATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAAACCAAGCCCGGTCTCAGCTCCTACTCCTCCAACCCTCGCAGCGCCACCCTGTCGCTCTCAGATCTCTTCCACAAGACCGAAGCAACCGTTCCTAAGGACCTGTGTCCCTTCACCCCCGTCCACGTCGGCGCAACCGCCGGCCTCCGGGTGTTAGGTGTTGATGCATCTAATCACATTCTCCAGGCCGTTAGGGATTTGCTTAAGCAGTCAAGCTCCCTCAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

136

Amino Acids

14.61

Weight (kDa)

7.01

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 19 - 133 6.7e-31 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 108
AciI CCGC 2 cut(s) 106, 315
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 324
AflII CTTAAG 1 cut(s) 380
AjiI CACGTC 2 cut(s) 115, 304
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 5 cut(s) 96, 169, 198, 393, 402
AluI AGCT 5 cut(s) 96, 169, 198, 393, 402
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 319, 363
ApeKI GCWGC 3 cut(s) 93, 102, 219
AspLEI GCGC 2 cut(s) 224, 311
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 2 cut(s) 189, 326
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 277
AxyI CCTNAGG 1 cut(s) 273
BanII GRGCYC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 3 cut(s) 105, 114, 231
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 2 cut(s) 189, 326
BcoDI GTCTC 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 225
BfrI CTTAAG 1 cut(s) 380
BglII AGATCT 2 cut(s) 160, 241
BisI GCNGC 4 cut(s) 94, 103, 106, 220
BlsI GCNGC 4 cut(s) 95, 104, 107, 221
Bme1390I CCNGG 3 cut(s) 189, 326, 362
Bme18I GGWCC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 2 cut(s) 115, 304
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 3 cut(s) 189, 326, 362
BmsI GCATC 2 cut(s) 331, 353
BoxI GACNNNNGTC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 398
BpuMI CCSGG 2 cut(s) 189, 326
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 89, 317
Bse21I CCTNAGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 208, 252
BseRI GAGGAG 4 cut(s) 37, 40, 134, 196
BseXI GCAGC 3 cut(s) 105, 114, 231
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 321, 365
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 5 cut(s) 90, 99, 189, 318, 325
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 2 cut(s) 321, 365
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 160, 241
BspACI CCGC 2 cut(s) 106, 315
BspANI GGCC 2 cut(s) 321, 365
BspCNI CTCAG 2 cut(s) 207, 251
BspFNI CGCG 1 cut(s) 108
BspQI GCTCTTC 1 cut(s) 176
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 89, 317
BssAI RCCGGY 2 cut(s) 89, 317
BssMI GATC 2 cut(s) 160, 241
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 176, 251
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 91, 319
BstDEI CTNAG 4 cut(s) 194, 238, 273, 398
BstFNI CGCG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 311
BstKTI GATC 2 cut(s) 163, 244
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 160, 241
BstMWI GCNNNNNNNGC 3 cut(s) 99, 102, 399
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 282
BstSCI CCNGG 3 cut(s) 187, 324, 360
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 105, 114, 231
BstV2I GAAGAC 1 cut(s) 109
BstX2I RGATCY 2 cut(s) 160, 241
BstYI RGATCY 2 cut(s) 160, 241
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 2 cut(s) 321, 365
BtrI CACGTC 2 cut(s) 115, 304
Cac8I GCNNGC 2 cut(s) 91, 319
CfoI GCGC 2 cut(s) 224, 311
Cfr10I RCCGGY 2 cut(s) 89, 317
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 2 cut(s) 95, 97
CviAII CATG 1 cut(s) 16
CviJI RGCY 9 cut(s) 96, 105, 169, 187, 198, 321, 365, 393, 402
CviKI_1 RGCY 9 cut(s) 96, 105, 169, 187, 198, 321, 365, 393, 402
DdeI CTNAG 4 cut(s) 194, 238, 273, 398
DpnI GATC 2 cut(s) 162, 243
DpnII GATC 2 cut(s) 160, 241
Eam1104I CTCTTC 2 cut(s) 176, 251
EarI CTCTTC 2 cut(s) 176, 251
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 171
FaeI CATG 1 cut(s) 19
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 94, 103, 106, 220
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 94, 103, 106, 220
GlaI GCGC 2 cut(s) 223, 310
GluI GCNGC 4 cut(s) 94, 103, 106, 220
GsuI CTGGAG 1 cut(s) 344
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 321, 365
HapII CCGG 5 cut(s) 90, 99, 189, 318, 325
HgaI GACGC 2 cut(s) 95, 97
HhaI GCGC 2 cut(s) 224, 311
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 2 cut(s) 222, 309
HinP1I GCGC 2 cut(s) 222, 309
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 5 cut(s) 90, 99, 189, 318, 325
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 112, 301
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 155, 241
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 112, 301
Hpy99I CGWCG 2 cut(s) 89, 308
HpyAV CCTTC 2 cut(s) 76, 298
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 3 cut(s) 12, 114, 303
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 102, 399
HpyF3I CTNAG 4 cut(s) 194, 238, 273, 398
HpySE526I ACGT 3 cut(s) 12, 114, 303
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 2 cut(s) 222, 309
KroI GCCGGC 2 cut(s) 89, 317
KroNI GCCGGC 2 cut(s) 91, 319
Kzo9I GATC 2 cut(s) 160, 241
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 4 cut(s) 101, 203, 398, 407
Lsp1109I GCAGC 3 cut(s) 105, 114, 231
LweI GCATC 2 cut(s) 331, 353
MaeII ACGT 3 cut(s) 12, 114, 303
MalI GATC 2 cut(s) 162, 243
MboI GATC 2 cut(s) 160, 241
MboII GAAGA 4 cut(s) 73, 109, 163, 238
MflI RGATCY 2 cut(s) 160, 241
MhlI GDGCHC 1 cut(s) 171
MlyI GAGTC 2 cut(s) 22, 50
MmeI TCCRAC 2 cut(s) 78, 234
Mph1103I ATGCAT 1 cut(s) 346
MroNI GCCGGC 2 cut(s) 89, 317
MseI TTAA 1 cut(s) 381
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 5 cut(s) 90, 99, 189, 318, 325
MspR9I CCNGG 3 cut(s) 189, 326, 362
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 99, 102, 399
NaeI GCCGGC 2 cut(s) 91, 319
NciI CCSGG 2 cut(s) 189, 326
NdeII GATC 2 cut(s) 160, 241
NgoMIV GCCGGC 2 cut(s) 89, 317
NlaIII CATG 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 176
PdiI GCCGGC 2 cut(s) 91, 319
PfeI GAWTC 2 cut(s) 34, 40
PkrI GCNGC 4 cut(s) 95, 104, 107, 221
PleI GAGTC 2 cut(s) 22, 50
PpsI GAGTC 2 cut(s) 22, 50
PpuMI RGGWCCY 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 1 cut(s) 277
PspPPI RGGWCCY 1 cut(s) 277
PsuI RGATCY 2 cut(s) 160, 241
SacI GAGCTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 4 cut(s) 94, 103, 106, 220
Sau3AI GATC 2 cut(s) 160, 241
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 3 cut(s) 189, 326, 362
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 2 cut(s) 331, 353
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 164, 380
SmoI CTYRAG 2 cut(s) 164, 380
SsiI CCGC 2 cut(s) 106, 315
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 187, 324, 360
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 3 cut(s) 15, 117, 306
TaqI TCGA 3 cut(s) 84, 126, 165
TaqII GACCGA 1 cut(s) 272
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 2 cut(s) 34, 40
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseI GCWGC 3 cut(s) 93, 102, 219
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.