Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

24666254 .. 24667095

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG268700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAACTCCTAATCAAGCAAATTCACAGCAAAAATCCAAAATCCAAATTCCATAGACCTTCTTCTTCTTCTTCTTCTTATGCACATTTGCTTAAACACACAAAATTGCAACAACAAGGTATGATTGGATTGGGATTATTGATCCCAGCCCTCGTTTCAGACCCAAATCTGGATCCTGAGGGGAAGCAGATCCGTTACAGATCCCCTTCATCGGTCGAACTCCTCGAGTCTCAGACCAATTCTCCGCCCTCCGATCTCACTCAAATGCTCAAACGTCCAGCCAGATGGAGCACCGACTCCCTCTCCGACAAGCTTTACAAGTACCAGAGCCTCCTCCTCGTCTCCGTCCATGTCTTCTCCTTTGACCGCGACCTCAATCTGCTCCCCATCGGCAAAGATCTCGAGCTCTTCCTTCAGACCAAGCCGGGGCTCAGCTTCTACGCCGTCGACCCTCGCAGCGCTGCCAAGTCACTCATCGATCTCCTCCAAAAGGCAGAGGCCGCCGTTCCCAAAGATCTTCGATCCATGGTTTCCCGACCCATAAAACCAACTCCAAGAAATTTTCTTTTCCTGTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

193

Amino Acids

21.75

Weight (kDa)

9.91

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	115 - 177	2.7e-09	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	245, 367, 501
AclWI	GGATC	6 cut(s)	136, 167, 180, 184, 195, 516
AcsI	RAATTY	3 cut(s)	21, 47, 559
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	460
AfiI	CCNNNNNNNGG	4 cut(s)	169, 211, 426, 490
AluBI	AGCT	3 cut(s)	313, 406, 435
AluI	AGCT	3 cut(s)	313, 406, 435
Alw21I	GWGCWC	2 cut(s)	293, 408
Alw26I	GTCTC	2 cut(s)	234, 346
AlwI	GGATC	6 cut(s)	136, 167, 180, 184, 195, 516
Ama87I	CYCGRG	2 cut(s)	224, 401
Aor51HI	AGCGCT	1 cut(s)	460
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	2 cut(s)	456, 461
ApoI	RAATTY	3 cut(s)	21, 47, 559
AspLEI	GCGC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	426
AvaI	CYCGRG	2 cut(s)	224, 401
AxyI	CCTNAGG	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	172
BanII	GRGCYC	2 cut(s)	408, 432
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	293, 408
BbvI	GCAGC	2 cut(s)	448, 468
BccI	CCATC	2 cut(s)	279, 395
BceAI	ACGGC	2 cut(s)	428, 488
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	2 cut(s)	234, 346
BfoI	RGCGCY	1 cut(s)	462
BglII	AGATCT	2 cut(s)	397, 514
BisI	GCNGC	3 cut(s)	457, 462, 501
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	3 cut(s)	458, 463, 502
Bme1390I	CCNGG	1 cut(s)	426
BmeT110I	CYCGRG	2 cut(s)	224, 401
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	425, 525
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 287, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 211, 426, 490
Bse21I	CCTNAGG	1 cut(s)	177
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	425, 525
BseLI	CCNNNNNNNGG	4 cut(s)	169, 211, 426, 490
BseMII	CTCAG	3 cut(s)	168, 245, 445
BseRI	GAGGAG	4 cut(s)	212, 323, 326, 473
BseXI	GCAGC	2 cut(s)	448, 468
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	500
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	293, 408
BsiHKCI	CYCGRG	2 cut(s)	224, 401
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	169, 211, 426, 490
BsmAI	GTCTC	2 cut(s)	234, 346
BsmBI	CGTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	500
BsoBI	CYCGRG	2 cut(s)	224, 401
Bsp1286I	GDGCHC	3 cut(s)	293, 408, 432
Bsp143I	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
Bsp1720I	GCTNAGC	1 cut(s)	431
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	3 cut(s)	245, 367, 501
BspANI	GGCC	1 cut(s)	500
BspCNI	CTCAG	3 cut(s)	169, 244, 444
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	6 cut(s)	136, 167, 180, 184, 195, 516
BspQI	GCTCTTC	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	425, 525
BssMI	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
BssT1I	CCWWGG	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	413
BstDEI	CTNAG	3 cut(s)	177, 231, 431
BstDSI	CCRYGG	1 cut(s)	525
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	9 cut(s)	144, 175, 192, 203, 256, 400, 481, 517, 524
BstMAI	GTCTC	2 cut(s)	234, 346
BstMBI	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	448, 468
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	5 cut(s)	172, 189, 200, 397, 514
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	5 cut(s)	172, 189, 200, 397, 514
Bsu15I	ATCGAT	1 cut(s)	477
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	525
CfoI	GCGC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	350, 526
CviJI	RGCY	9 cut(s)	149, 281, 313, 330, 406, 424, 430, 435, 500
CviKI_1	RGCY	9 cut(s)	149, 281, 313, 330, 406, 424, 430, 435, 500
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	3 cut(s)	177, 231, 431
DpnI	GATC	9 cut(s)	143, 174, 191, 202, 255, 399, 480, 516, 523
DpnII	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	2 cut(s)	408, 432
Eco47III	AGCGCT	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	224, 401
EcoICRI	GAGCTC	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	408, 432
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	2 cut(s)	353, 529
FaiI	YATR	6 cut(s)	54, 81, 122, 351, 527, 542
FatI	CATG	2 cut(s)	349, 525
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	457, 462, 501
FriOI	GRGCYC	2 cut(s)	408, 432
Fsp4HI	GCNGC	3 cut(s)	457, 462, 501
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	457, 462, 501
GsaI	CCCAGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	353, 529
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	227, 296
HpaII	CCGG	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	5 cut(s)	160, 234, 253, 307, 417
Hpy188III	TCNNGA	4 cut(s)	170, 176, 401, 534
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	3 cut(s)	69, 216, 422
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	83, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	177, 231, 431
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	353, 529
HspAI	GCGC	1 cut(s)	459
Kzo9I	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	288, 387
LpnPI	CCDG	7 cut(s)	155, 159, 189, 291, 295, 338, 438
Lsp1109I	GCAGC	2 cut(s)	448, 468
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	2 cut(s)	194, 468
MalI	GATC	9 cut(s)	143, 174, 191, 202, 255, 399, 480, 516, 523
MboI	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
MboII	GAAGA	8 cut(s)	54, 57, 60, 63, 66, 346, 400, 509
MflI	RGATCY	5 cut(s)	172, 189, 200, 397, 514
MhlI	GDGCHC	3 cut(s)	293, 408, 432
MluCI	AATT	5 cut(s)	21, 47, 104, 238, 559
MlyI	GAGTC	2 cut(s)	236, 290
MmeI	TCCRAC	1 cut(s)	330
MseI	TTAA	2 cut(s)	93, 580
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
NlaIII	CATG	2 cut(s)	353, 529
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	468
PaeR7I	CTCGAG	2 cut(s)	224, 401
PciSI	GCTCTTC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	458, 463, 502
PleI	GAGTC	2 cut(s)	235, 290
PpsI	GAGTC	2 cut(s)	235, 290
Psp124BI	GAGCTC	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	224
PsuI	RGATCY	5 cut(s)	172, 189, 200, 397, 514
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	93, 580
SatI	GCNGC	3 cut(s)	457, 462, 501
Sau3AI	GATC	9 cut(s)	141, 172, 189, 200, 253, 397, 478, 514, 521
SchI	GAGTC	2 cut(s)	236, 290
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	3 cut(s)	293, 408, 432
SetI	ASST	7 cut(s)	61, 121, 277, 315, 375, 408, 437
Sfr274I	CTCGAG	2 cut(s)	224, 401
SlaI	CTCGAG	2 cut(s)	224, 401
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	224, 401
SmoI	CTYRAG	2 cut(s)	224, 401
Sse9I	AATT	5 cut(s)	21, 47, 104, 238, 559
SsiI	CCGC	3 cut(s)	245, 367, 501
SstI	GAGCTC	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	525
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	6 cut(s)	216, 225, 402, 447, 477, 520
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	5 cut(s)	21, 47, 104, 238, 559
TauI	GCSGC	1 cut(s)	503
Tru1I	TTAA	2 cut(s)	93, 580
Tru9I	TTAA	2 cut(s)	93, 580
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	2 cut(s)	456, 461
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	2 cut(s)	17, 198
TspGWI	ACGGA	2 cut(s)	182, 334
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	3 cut(s)	21, 47, 559
XhoI	CTCGAG	2 cut(s)	224, 401
XmiI	GTMKAC	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.