Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

5337262 .. 5339094

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g09830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTATTCCAGTGATTGACCTGAACCAGTTTCCAGATTCTGAAGAGTACAAGAAGCTGAGGGAAGCATCAGTGGAATGGGGTTGCTTCAGGTTAGTCAACCATAAGATCCCATTGACTTTAATGTCAGAGATGAAGAAAGTGGTCAGATCCCTTCTTGATCTGCCCATGGAGGTAAAAAAGAGGAACACTGATGTCATAGCTGGCAGTGGCTACATGGCACCCAGTGAGATCAACCCTCTCTATGAGGCTTTGGGTCTCTATGACTTAGGCTCATCTCAGGCTATACAGAACTTCTGCTCTCAGTTGGAGGCTTCTTCCTACCAAAGAGAGGTAATTGAGAAGTATGCAGAAGCAACTTATGAGCAGATAGTGGATATAGGGCATAAGTTGGCAGAGAGTCTTGGAGTGGGGAGTGGTTTTATGAAGGAATGGGCTTGCCAGTTTAGGATTAACAAGTACAACTTCATTCCCGAATCCATTGGATCTTCTGGAGTGCAGATACACACAGATTCCGGTTTTCTGACCATTCTTCAAGATGATGAAAATGTTGGAGGACTAGAAGTGATGGACAAGTCTGGTGTGTTTGTACCCGTTGATCCATGTCCAGGCACTCTCATTGTCAACCTTGGAGATGTTGCTAAGGCATGGAGCAACGGGAGGCTCTGCACTGTGAAGCACAGAGTACAATGCAGGGAAGCCACTGTTCGAGTCTCCATTGCTACGTTTCTGTTGGGACCAAAGGGTGAAGCAGTCGCAGCTCCTCCGGAATTTGTTGATCCGGAGCATCCACGTCTATATGTCCCTTTTACTATTGAAGACTACAGGAAGCTCAGAATCATAAAAAAACTGCAAGCTGGTGAAGCTCTGGAACTTGTACGCATGGAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

298

Amino Acids

33.1

Weight (kDa)

5.31

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 72	1.3e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	147 - 244	2.8e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	220
AccIII	TCCGGA	2 cut(s)	766, 781
AclWI	GGATC	5 cut(s)	103, 144, 493, 593, 773
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	2 cut(s)	63, 73
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	5 cut(s)	50, 461, 591, 687, 879
AfiI	CCNNNNNNNGG	2 cut(s)	331, 608
AgsI	TTSAA	2 cut(s)	536, 818
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	6 cut(s)	58, 203, 761, 832, 857, 866
AluI	AGCT	6 cut(s)	58, 203, 761, 832, 857, 866
Alw26I	GTCTC	2 cut(s)	263, 718
AlwI	GGATC	5 cut(s)	103, 144, 493, 593, 773
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor13HI	TCCGGA	2 cut(s)	766, 781
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	2 cut(s)	758, 872
AvaII	GGWCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	825
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	263, 718
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	823
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	737
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	222, 738
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	77, 796
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	1 cut(s)	513
Bpu10I	CCTNAGC	2 cut(s)	59, 642
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	168, 628
BsaWI	WCCGGW	3 cut(s)	515, 766, 781
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 608
Bse1I	ACTGG	4 cut(s)	11, 28, 225, 442
Bse3DI	GCAATG	1 cut(s)	717
BseAI	TCCGGA	2 cut(s)	766, 781
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	168, 628
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	331, 608
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	4 cut(s)	50, 293, 317, 847
BseNI	ACTGG	4 cut(s)	11, 28, 225, 442
BseRI	GAGGAG	1 cut(s)	753
BseXI	GCAGC	1 cut(s)	770
BsgI	GTGCAG	2 cut(s)	518, 652
BshNI	GGYRCC	1 cut(s)	220
BsiSI	CCGG	3 cut(s)	516, 767, 782
BslFI	GGGAC	2 cut(s)	750, 788
BslI	CCNNNNNNNGG	2 cut(s)	331, 608
BsmAI	GTCTC	2 cut(s)	263, 718
BsmFI	GGGAC	2 cut(s)	750, 788
Bso31I	GGTCTC	1 cut(s)	263
Bsp13I	TCCGGA	2 cut(s)	766, 781
Bsp143I	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
Bsp19I	CCATGG	1 cut(s)	168
BspCNI	CTCAG	4 cut(s)	51, 292, 316, 846
BspEI	TCCGGA	2 cut(s)	766, 781
BspLI	GGNNCC	2 cut(s)	222, 738
BspPI	GGATC	5 cut(s)	103, 144, 493, 593, 773
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	11, 28, 225, 442
BssECI	CCNNGG	2 cut(s)	168, 628
BssMI	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
BssT1I	CCWWGG	2 cut(s)	168, 628
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	2 cut(s)	673, 706
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	205, 439, 855
BstDEI	CTNAG	6 cut(s)	59, 268, 279, 303, 642, 833
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	787
BstKTI	GATC	7 cut(s)	111, 152, 163, 234, 488, 601, 781
BstMAI	GTCTC	2 cut(s)	263, 718
BstMBI	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 863
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	823
BstV1I	GCAGC	1 cut(s)	770
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	3 cut(s)	108, 149, 485
BstYI	RGATCY	3 cut(s)	108, 149, 485
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	7 cut(s)	18, 78, 189, 214, 232, 669, 702
Cac8I	GCNNGC	3 cut(s)	205, 439, 855
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	5 cut(s)	49, 460, 590, 686, 878
CviAII	CATG	5 cut(s)	169, 217, 603, 648, 883
CviQI	GTAC	5 cut(s)	49, 460, 590, 686, 878
DdeI	CTNAG	6 cut(s)	59, 268, 279, 303, 642, 833
DpnI	GATC	7 cut(s)	110, 151, 162, 233, 487, 600, 780
DpnII	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
DraIII	CACNNNGTG	1 cut(s)	227
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	168, 628
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	2 cut(s)	63, 73
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	2 cut(s)	168, 628
ErhI	CCWWGG	2 cut(s)	168, 628
FaeI	CATG	5 cut(s)	172, 220, 606, 651, 886
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	750, 788
FatI	CATG	5 cut(s)	168, 216, 602, 647, 882
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	1 cut(s)	774
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	1 cut(s)	759
GsuI	CTGGAG	1 cut(s)	513
HapII	CCGG	3 cut(s)	516, 767, 782
Hin1II	CATG	5 cut(s)	172, 220, 606, 651, 886
HincII	GTYRAC	2 cut(s)	100, 625
HindII	GTYRAC	2 cut(s)	100, 625
HinfI	GANTC	7 cut(s)	38, 400, 476, 512, 711, 837, 887
HpaII	CCGG	3 cut(s)	516, 767, 782
HphI	GGTGA	2 cut(s)	758, 872
Hpy166II	GTNNAC	2 cut(s)	100, 625
Hpy188I	TCNGA	5 cut(s)	43, 130, 149, 525, 836
Hpy188III	TCNNGA	9 cut(s)	35, 158, 473, 492, 536, 767, 782, 869, 891
Hpy8I	GTNNAC	2 cut(s)	100, 625
HpyAV	CCTTC	2 cut(s)	164, 421
HpyCH4III	ACNGT	2 cut(s)	673, 706
HpyCH4IV	ACGT	2 cut(s)	725, 793
HpyCH4V	TGCA	5 cut(s)	350, 499, 669, 693, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 863
HpyF3I	CTNAG	6 cut(s)	59, 268, 279, 303, 642, 833
HpySE526I	ACGT	2 cut(s)	725, 793
Hsp92II	CATG	5 cut(s)	172, 220, 606, 651, 886
Kpn2I	TCCGGA	2 cut(s)	766, 781
Kzo9I	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
LmnI	GCTCC	3 cut(s)	651, 766, 784
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	2 cut(s)	77, 796
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	725, 793
MalI	GATC	7 cut(s)	110, 151, 162, 233, 487, 600, 780
MboI	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
MboII	GAAGA	6 cut(s)	56, 148, 309, 480, 524, 830
MflI	RGATCY	3 cut(s)	108, 149, 485
MluCI	AATT	2 cut(s)	336, 770
MlyI	GAGTC	2 cut(s)	409, 720
MmeI	TCCRAC	2 cut(s)	288, 532
MroI	TCCGGA	2 cut(s)	766, 781
MseI	TTAA	2 cut(s)	122, 453
MspI	CCGG	3 cut(s)	516, 767, 782
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	758, 863
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
NlaIII	CATG	5 cut(s)	172, 220, 606, 651, 886
NlaIV	GGNNCC	2 cut(s)	222, 738
PfeI	GAWTC	4 cut(s)	38, 476, 512, 837
PkrI	GCNGC	1 cut(s)	760
PleI	GAGTC	2 cut(s)	408, 719
PpsI	GAGTC	2 cut(s)	408, 719
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	222, 738
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	108, 149, 485
RsaI	GTAC	5 cut(s)	50, 461, 591, 687, 879
RsaNI	GTAC	5 cut(s)	49, 460, 590, 686, 878
SaqAI	TTAA	2 cut(s)	122, 453
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	7 cut(s)	108, 149, 160, 231, 485, 598, 778
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	409, 720
ScrFI	CCNGG	1 cut(s)	609
SfaNI	GCATC	2 cut(s)	77, 796
SfcI	CTRYAG	1 cut(s)	823
SinI	GGWCC	1 cut(s)	737
Sse9I	AATT	2 cut(s)	336, 770
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	2 cut(s)	168, 628
TaaI	ACNGT	2 cut(s)	673, 706
TaiI	ACGT	2 cut(s)	728, 796
TaqI	TCGA	1 cut(s)	709
TasI	AATT	2 cut(s)	336, 770
TatI	WGTACW	3 cut(s)	48, 459, 685
TfiI	GAWTC	4 cut(s)	38, 476, 512, 837
Tru1I	TTAA	2 cut(s)	122, 453
Tru9I	TTAA	2 cut(s)	122, 453
TscAI	CASTG	7 cut(s)	18, 78, 196, 214, 232, 676, 709
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	4 cut(s)	149, 440, 457, 558
TspRI	CASTG	7 cut(s)	18, 78, 196, 214, 232, 676, 709
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	770
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.