Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

8615935 .. 8617645

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1106500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAGGTGGAGAGGAAGACTGCAGGACAATCCCAGCCATTGACCTGAAAAAATTTCCAGAAGCAGAAGAGTACAGGAAGCTGAGGGAAGCATCAGAGACATGGGGATGCTTCAGGCTTGTGAACCACATGATCCCACCAGCTCTGATGTCGGAGATGATATCAGTGGTCAGATCTTTGCTGGACCTGCCCATGGAGATCAAGAAGCAGAACAAGGAAGTGATAGCTGGCAGTGGATACCTGGCTCCCAGCAAAGTCAACCCTATCTATGAATCTTTAGGGTTCCACGACTTGGGATCGCGTCAGGCTCTGGACAGCTTTTGCTCTCAGTTAAATGCTTCTTCGTACCAGAGAGAGGTGATAGAGAAGTATGCTCAAGCAGTGTGCGAGCAGATTGTGGACATAGGGCAGAAGTTGGCAGAGAGTCTAGGGTTGGCTGATAGTGATTATCTCAAGGGGTGGCCCTGCCAGTTCAGGATAAACAAGTACACCTTCACTTCTGAATCAGTTGGATCCCTTGGCTTACGATCACATACAGACTCAGGATTTCTAACCATTCTTCAGGACGATGAAATTGTCGGTGGCTTGGAAGTAATGGACAAATCCGGCGCCTTTGTAGCCGTTGATCCTTGCCCAGGCACTCTCGTTGTTAATCTCGGGGATGTCGCTCATGCATGGAGCAATGGAAGGTTGTGCAATGTGAAGCACAGAGTACAATTCCGGGAGGCAAGAATTCGAGTTTCGATCTCTTCATTCCAACGTGGACCGGATGAGGAAGCGGGAGTGGAAGCTCCTCCAGAATTGGTGGATTCCGAGCACCCTCGACTTTACGTTCCCTTTACTTATGAAGATTACAGAAAGCTAAGACTCTCCGCAAACCTGCATGCTGGTGAAGCCCTTCCACTCGTACGCAACCTCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.11

Weight (kDa)

5.29

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	11 - 80	2.6e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	156 - 253	1.4e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	195, 888
AccB1I	GGYRCC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccII	CGCG	1 cut(s)	301
AciI	CCGC	2 cut(s)	779, 873
AclWI	GGATC	5 cut(s)	127, 304, 507, 520, 620
AcsI	RAATTY	2 cut(s)	53, 732
AcuI	CTGAAG	2 cut(s)	97, 545
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	5 cut(s)	74, 347, 488, 714, 909
AfiI	CCNNNNNNNGG	4 cut(s)	193, 292, 355, 635
AjnI	CCWGG	2 cut(s)	240, 634
AluBI	AGCT	6 cut(s)	82, 143, 227, 318, 791, 862
AluI	AGCT	6 cut(s)	82, 143, 227, 318, 791, 862
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	5 cut(s)	127, 304, 507, 520, 620
AlwNI	CAGNNNCTG	1 cut(s)	310
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	1 cut(s)	461
ApoI	RAATTY	2 cut(s)	53, 732
Asp700I	GAANNNNTTC	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	3 cut(s)	184, 462, 764
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	2 cut(s)	370, 902
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	184, 764
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	2 cut(s)	242, 636
BciVI	GTATCC	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	612
BfuAI	ACCTGC	2 cut(s)	195, 888
BfuI	GTATCC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	173
Bme1390I	CCNGG	3 cut(s)	242, 636, 722
Bme18I	GGWCC	2 cut(s)	184, 764
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	184, 462, 764
BmiI	GGNNCC	4 cut(s)	246, 284, 514, 610
BmrFI	CCNGG	3 cut(s)	242, 636, 722
BmsI	GCATC	2 cut(s)	98, 101
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	780
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	2 cut(s)	360, 437
BpuMI	CCSGG	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	192, 517, 634
BsaWI	WCCGGW	1 cut(s)	766
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 292, 355, 635
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	2 cut(s)	688, 703
BseBI	CCWGG	2 cut(s)	242, 636
BseDI	CCNNGG	3 cut(s)	192, 517, 634
BseGI	GGATG	3 cut(s)	113, 667, 775
BseLI	CCNNNNNNNGG	4 cut(s)	193, 292, 355, 635
BseMI	GCAATG	2 cut(s)	688, 703
BseMII	CTCAG	3 cut(s)	74, 341, 555
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	783
BseYI	CCCAGC	2 cut(s)	34, 248
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	3 cut(s)	606, 721, 767
BsiWI	CGTACG	1 cut(s)	907
BslI	CCNNNNNNNGG	4 cut(s)	193, 292, 355, 635
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	779, 873
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	75, 340, 554
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	246, 284, 514, 610
BspMAI	CTGCAG	1 cut(s)	26
BspMI	ACCTGC	2 cut(s)	195, 888
BspPI	GGATC	5 cut(s)	127, 304, 507, 520, 620
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	688, 703
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	192, 517, 634
BssMI	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	192, 517
Bst2UI	CCWGG	2 cut(s)	242, 636
Bst6I	CTCTTC	2 cut(s)	63, 754
BstACI	GRCGYC	1 cut(s)	609
BstC8I	GCNNGC	3 cut(s)	229, 389, 885
BstDEI	CTNAG	4 cut(s)	83, 327, 541, 863
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	113, 667, 775
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	8 cut(s)	135, 176, 201, 299, 515, 530, 628, 747
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
BstNI	CCWGG	2 cut(s)	242, 636
BstNSI	RCATGY	1 cut(s)	887
BstSCI	CCNGG	3 cut(s)	240, 634, 720
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	2 cut(s)	173, 512
BstYI	RGATCY	2 cut(s)	173, 512
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	113, 667, 775
BtsI	GCAGTG	2 cut(s)	238, 387
BtsIMutI	CAGTG	3 cut(s)	171, 238, 387
BveI	ACCTGC	2 cut(s)	195, 888
Cac8I	GCNNGC	3 cut(s)	229, 389, 885
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	3 cut(s)	184, 462, 764
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	5 cut(s)	73, 346, 487, 713, 908
CviAII	CATG	6 cut(s)	102, 130, 193, 671, 675, 884
CviQI	GTAC	5 cut(s)	73, 346, 487, 713, 908
DdeI	CTNAG	4 cut(s)	83, 327, 541, 863
DinI	GGCGCC	1 cut(s)	610
DpnI	GATC	8 cut(s)	134, 175, 200, 298, 514, 529, 627, 746
DpnII	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
Eam1104I	CTCTTC	2 cut(s)	63, 754
EarI	CTCTTC	2 cut(s)	63, 754
Eco130I	CCWWGG	2 cut(s)	192, 517
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	184, 764
Eco57I	CTGAAG	2 cut(s)	97, 545
Eco88I	CYCGRG	1 cut(s)	656
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	732
EcoRII	CCWGG	2 cut(s)	240, 634
EcoRV	GATATC	1 cut(s)	162
EcoT14I	CCWWGG	2 cut(s)	192, 517
EcoT22I	ATGCAT	1 cut(s)	676
EgeI	GGCGCC	1 cut(s)	610
EheI	GGCGCC	1 cut(s)	610
ErhI	CCWWGG	2 cut(s)	192, 517
FaeI	CATG	6 cut(s)	105, 133, 196, 674, 678, 887
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	6 cut(s)	101, 129, 192, 670, 674, 883
FauI	CCCGC	1 cut(s)	772
FokI	GGATG	3 cut(s)	120, 674, 782
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	610
GsaI	CCCAGC	2 cut(s)	38, 252
GsuI	CTGGAG	1 cut(s)	780
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	3 cut(s)	606, 721, 767
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	6 cut(s)	105, 133, 196, 674, 678, 887
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	6 cut(s)	272, 424, 503, 539, 809, 867
HpaII	CCGG	3 cut(s)	606, 721, 767
HphI	GGTGA	2 cut(s)	370, 902
Hpy166II	GTNNAC	5 cut(s)	124, 259, 400, 489, 764
Hpy188I	TCNGA	6 cut(s)	97, 147, 154, 173, 502, 814
Hpy188III	TCNNGA	7 cut(s)	59, 202, 311, 475, 543, 563, 797
Hpy8I	GTNNAC	5 cut(s)	124, 259, 400, 489, 764
HpyAV	CCTTC	3 cut(s)	502, 681, 908
HpyCH4IV	ACGT	2 cut(s)	760, 831
HpyCH4V	TGCA	4 cut(s)	24, 674, 696, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
HpyF3I	CTNAG	4 cut(s)	83, 327, 541, 863
HpySE526I	ACGT	2 cut(s)	760, 831
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	6 cut(s)	105, 133, 196, 674, 678, 887
HspAI	GCGC	1 cut(s)	609
KasI	GGCGCC	1 cut(s)	608
Kzo9I	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
LmnI	GCTCC	3 cut(s)	250, 678, 796
LweI	GCATC	2 cut(s)	98, 101
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	760, 831
MalI	GATC	8 cut(s)	134, 175, 200, 298, 514, 529, 627, 746
MboI	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
MboII	GAAGA	6 cut(s)	29, 80, 333, 551, 741, 860
MflI	RGATCY	2 cut(s)	173, 512
MhlI	GDGCHC	1 cut(s)	819
MluCI	AATT	5 cut(s)	53, 573, 716, 732, 800
Mly113I	GGCGCC	1 cut(s)	609
MlyI	GAGTC	3 cut(s)	433, 533, 861
MmeI	TCCRAC	3 cut(s)	132, 490, 781
MnlI	CCTC	7 cut(s)	7, 78, 349, 718, 766, 804, 831
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	897
MseI	TTAA	2 cut(s)	332, 651
MslI	CAYNNNNRTG	2 cut(s)	106, 888
MspI	CCGG	3 cut(s)	606, 721, 767
MspR9I	CCNGG	3 cut(s)	242, 636, 722
MvaI	CCWGG	2 cut(s)	242, 636
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
NarI	GGCGCC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	722
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
NlaIII	CATG	6 cut(s)	105, 133, 196, 674, 678, 887
NlaIV	GGNNCC	4 cut(s)	246, 284, 514, 610
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	887
PaeI	GCATGC	1 cut(s)	887
PdmI	GAANNNNTTC	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	272, 503, 809
Pfl23II	CGTACG	1 cut(s)	907
PflMI	CCANNNNNTGG	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	720
PleI	GAGTC	3 cut(s)	432, 533, 861
PluTI	GGCGCC	1 cut(s)	612
PpsI	GAGTC	3 cut(s)	432, 533, 861
Psp6I	CCWGG	2 cut(s)	240, 634
PspFI	CCCAGC	2 cut(s)	34, 248
PspGI	CCWGG	2 cut(s)	240, 634
PspLI	CGTACG	1 cut(s)	907
PspN4I	GGNNCC	4 cut(s)	246, 284, 514, 610
PspPI	GGNCC	3 cut(s)	184, 462, 764
PstI	CTGCAG	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	173, 512
RsaI	GTAC	5 cut(s)	74, 347, 488, 714, 909
RsaNI	GTAC	5 cut(s)	73, 346, 487, 713, 908
RseI	CAYNNNNRTG	2 cut(s)	106, 888
SaqAI	TTAA	2 cut(s)	332, 651
Sau3AI	GATC	8 cut(s)	132, 173, 198, 296, 512, 527, 625, 744
Sau96I	GGNCC	3 cut(s)	184, 462, 764
SchI	GAGTC	3 cut(s)	433, 533, 861
ScrFI	CCNGG	3 cut(s)	242, 636, 722
SduI	GDGCHC	1 cut(s)	819
SfaNI	GCATC	2 cut(s)	98, 101
SfcI	CTRYAG	1 cut(s)	22
SfoI	GGCGCC	1 cut(s)	610
SinI	GGWCC	2 cut(s)	184, 764
SmiMI	CAYNNNNRTG	2 cut(s)	106, 888
SmlI	CTYRAG	2 cut(s)	375, 452
SmoI	CTYRAG	2 cut(s)	375, 452
SphI	GCATGC	1 cut(s)	887
Sse9I	AATT	5 cut(s)	53, 573, 716, 732, 800
SsiI	CCGC	2 cut(s)	779, 873
SspDI	GGCGCC	1 cut(s)	608
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	3 cut(s)	240, 634, 720
StyI	CCWWGG	2 cut(s)	192, 517
TaiI	ACGT	2 cut(s)	763, 834
TaqI	TCGA	3 cut(s)	736, 743, 823
TasI	AATT	5 cut(s)	53, 573, 716, 732, 800
TatI	WGTACW	3 cut(s)	72, 486, 712
TfiI	GAWTC	3 cut(s)	272, 503, 809
Tru1I	TTAA	2 cut(s)	332, 651
Tru9I	TTAA	2 cut(s)	332, 651
TscAI	CASTG	3 cut(s)	171, 238, 387
TspDTI	ATGAA	4 cut(s)	285, 585, 741, 861
TspRI	CASTG	3 cut(s)	171, 238, 387
Van91I	CCANNNNNTGG	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	184, 764
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	53, 732
XceI	RCATGY	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	897
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.