Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

18134982 .. 18136738

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G188800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTGAGGGTGAAGATTGCATGACCATCCCAGTGATTGATATGCAAAAGTTTCCAGATGCAGAAGAGTACAAGAAACTGAGGGAAGCATCTGAGATATGGGGCTGCTTCAGGCTTATCAACCACAAGATCCCATTGGCTCTTATGAAGGAGATGAAGGCTGTGGTCAGATCCCTGCTTGACCTGCCCATGGAGATCAAGCAGCAGAACAAGGATGTCATAGCTGGTAGTGGCTACATGGCACCCAGCAAAGTCAACCCTCTTTATGAGGCTCTGGGTCTTTATGACTTGGGCTCACCTGAGGCTGTGCATACTTTTTGCTCTAAGTTGGATGCCTCTTCCCATCAGAGAGAGATAATATCGAAGTATGCTCAAGCAGTGTATGATCAGATTGTGGAAATAGGGCACAAGTTGGCAGAGAGTCTTGGGTTGGTAAATGTTGATTTTCTCAAGGGCTGGCCTTGCCAGTTTAGGATAAACAAGTACAACTTCAAACCTGAATCAGTGGGCTCTTCTGGGGTACAGATACACACAGATTCAGGATTTCTAACCATTCTTCAAGATGATGAAAATGTTGGTGGTCTAGAAGTGATGGATAAAGCTGGTGCCTTTGTCCCAGTTGATCCTTGCCCAGGCACTCTCCTTGTCAATCTTGGGGATGTTGCTCAGGCATGGAGCAATGGGAGGTTGTGCAATGTGAGGCATAGAGTGCAATGCAGGGAGGCAACGATTCGAGTTTCGATTGCTACATTTCTCTTGGGACCAAAGGATCAGGAGGCTGTGGAGGCTCCTCCGGAATTCGTGGATTCTGAGCATCCACGGCTCTATGTCCCTTTTACTTATGAAGACTACAGAAAGCTCAGGCTCTCCTCAAAATTGCAGGCTGGTGAAGCCCTTGCTGTCCTGCGTACCACCCCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.16

Weight (kDa)

5.47

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	2 cut(s)	241, 605
AccIII	TCCGGA	1 cut(s)	793
AclWI	GGATC	4 cut(s)	124, 165, 617, 777
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	4 cut(s)	71, 485, 522, 910
AfiI	CCNNNNNNNGG	2 cut(s)	190, 632
AgsI	TTSAA	2 cut(s)	493, 560
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	3 cut(s)	224, 602, 859
AluI	AGCT	3 cut(s)	224, 602, 859
AlwI	GGATC	4 cut(s)	124, 165, 617, 777
Aor13HI	TCCGGA	1 cut(s)	793
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	105, 202
ApoI	RAATTY	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	761
AsuHPI	GGTGA	4 cut(s)	17, 23, 288, 899
AvaII	GGWCC	1 cut(s)	761
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	408
BanI	GGYRCC	2 cut(s)	241, 605
BanII	GRGCYC	2 cut(s)	296, 512
BbsI	GAAGAC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	92, 214
BccI	CCATC	3 cut(s)	35, 351, 586
BceAI	ACGGC	1 cut(s)	836
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	385
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	2 cut(s)	106, 203
BlsI	GCNGC	2 cut(s)	107, 204
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	4 cut(s)	243, 607, 762, 789
BmrFI	CCNGG	1 cut(s)	633
BmrI	ACTGGG	2 cut(s)	26, 611
BmsI	GCATC	4 cut(s)	49, 98, 322, 823
BmuI	ACTGGG	2 cut(s)	26, 611
BpiI	GAAGAC	1 cut(s)	852
Bpu10I	CCTNAGC	2 cut(s)	666, 860
BpuEI	CTTGAG	2 cut(s)	357, 434
BsaJI	CCNNGG	3 cut(s)	189, 631, 818
BsaWI	WCCGGW	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 632
Bse1I	ACTGG	3 cut(s)	32, 466, 617
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	3 cut(s)	685, 700, 719
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	189, 631, 818
BseGI	GGATG	6 cut(s)	27, 220, 337, 664, 814, 917
BseLI	CCNNNNNNNGG	2 cut(s)	190, 632
BseMI	GCAATG	3 cut(s)	685, 700, 719
BseMII	CTCAG	6 cut(s)	71, 84, 291, 680, 801, 874
BseNI	ACTGG	3 cut(s)	32, 466, 617
BseRI	GAGGAG	2 cut(s)	780, 859
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	92, 214
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	460
BshNI	GGYRCC	2 cut(s)	241, 605
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	3 cut(s)	599, 774, 815
BslI	CCNNNNNNNGG	2 cut(s)	190, 632
BsmFI	GGGAC	3 cut(s)	599, 774, 815
BsnI	GGCC	1 cut(s)	460
Bsp1286I	GDGCHC	3 cut(s)	296, 408, 512
Bsp13I	TCCGGA	1 cut(s)	793
Bsp143I	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	6 cut(s)	72, 85, 292, 679, 802, 873
BspEI	TCCGGA	1 cut(s)	793
BspLI	GGNNCC	4 cut(s)	243, 607, 762, 789
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	4 cut(s)	124, 165, 617, 777
BspQI	GCTCTTC	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	241, 605
BsrDI	GCAATG	3 cut(s)	685, 700, 719
BsrI	ACTGG	3 cut(s)	32, 466, 617
BssECI	CCNNGG	3 cut(s)	189, 631, 818
BssMI	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	633
Bst6I	CTCTTC	3 cut(s)	60, 343, 517
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstC8I	GCNNGC	2 cut(s)	458, 882
BstDEI	CTNAG	7 cut(s)	80, 93, 300, 324, 666, 810, 860
BstDSI	CCRYGG	2 cut(s)	189, 818
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	6 cut(s)	27, 220, 337, 664, 814, 917
BstKTI	GATC	6 cut(s)	132, 173, 198, 388, 625, 772
BstMBI	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 462, 709, 785, 820, 890
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	850
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	92, 214
BstV2I	GAAGAC	1 cut(s)	852
BstX2I	RGATCY	2 cut(s)	129, 170
BstYI	RGATCY	2 cut(s)	129, 170
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	2 cut(s)	189, 818
BtsCI	GGATG	6 cut(s)	27, 220, 337, 664, 814, 917
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	39, 384, 510
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	458, 882
Cfr13I	GGNCC	1 cut(s)	761
Csp6I	GTAC	4 cut(s)	70, 484, 521, 909
CviAII	CATG	4 cut(s)	22, 190, 238, 672
CviQI	GTAC	4 cut(s)	70, 484, 521, 909
DdeI	CTNAG	7 cut(s)	80, 93, 300, 324, 666, 810, 860
DpnI	GATC	6 cut(s)	131, 172, 197, 387, 624, 771
DpnII	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
Eam1104I	CTCTTC	3 cut(s)	60, 343, 517
EarI	CTCTTC	3 cut(s)	60, 343, 517
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	296, 512
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	300
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	296, 512
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	25, 193, 241, 675
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	3 cut(s)	599, 774, 815
FatI	CATG	4 cut(s)	21, 189, 237, 671
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	106, 203
FokI	GGATG	6 cut(s)	14, 227, 344, 671, 801, 904
FriOI	GRGCYC	2 cut(s)	296, 512
Fsp4HI	GCNGC	2 cut(s)	106, 203
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	2 cut(s)	106, 203
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	794
Hin1II	CATG	4 cut(s)	25, 193, 241, 675
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	5 cut(s)	421, 500, 536, 730, 806
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	4 cut(s)	17, 23, 288, 899
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	94, 170, 348, 390, 811
Hpy188III	TCNNGA	6 cut(s)	56, 540, 560, 584, 773, 794
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	142, 151
HpyCH4V	TGCA	8 cut(s)	21, 46, 62, 310, 693, 712, 717, 880
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 462, 709, 785, 820, 890
HpyF3I	CTNAG	7 cut(s)	80, 93, 300, 324, 666, 810, 860
Hsp92II	CATG	4 cut(s)	25, 193, 241, 675
Kpn2I	TCCGGA	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
LguI	GCTCTTC	1 cut(s)	517
LmnI	GCTCC	2 cut(s)	675, 793
Lsp1109I	GCAGC	2 cut(s)	92, 214
LweI	GCATC	4 cut(s)	49, 98, 322, 823
MaeI	CTAG	1 cut(s)	584
MalI	GATC	6 cut(s)	131, 172, 197, 387, 624, 771
MboI	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
MboII	GAAGA	6 cut(s)	26, 77, 330, 504, 548, 857
MflI	RGATCY	2 cut(s)	129, 170
MhlI	GDGCHC	3 cut(s)	296, 408, 512
MluCI	AATT	2 cut(s)	797, 875
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	793
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	6 cut(s)	184, 462, 709, 785, 820, 890
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
NlaIII	CATG	4 cut(s)	25, 193, 241, 675
NlaIV	GGNNCC	4 cut(s)	243, 607, 762, 789
PciSI	GCTCTTC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	500, 536, 730, 806
PkrI	GCNGC	2 cut(s)	107, 204
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	243, 607, 762, 789
PspPI	GGNCC	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	129, 170
RsaI	GTAC	4 cut(s)	71, 485, 522, 910
RsaNI	GTAC	4 cut(s)	70, 484, 521, 909
RseI	CAYNNNNRTG	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	517
SatI	GCNGC	2 cut(s)	106, 203
Sau3AI	GATC	6 cut(s)	129, 170, 195, 385, 622, 769
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	3 cut(s)	296, 408, 512
SetI	ASST	7 cut(s)	186, 226, 301, 499, 604, 689, 861
SfaNI	GCATC	4 cut(s)	49, 98, 322, 823
SfcI	CTRYAG	1 cut(s)	850
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	2 cut(s)	372, 449
SmoI	CTYRAG	2 cut(s)	372, 449
Sse9I	AATT	2 cut(s)	797, 875
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	3 cut(s)	362, 733, 740
TasI	AATT	2 cut(s)	797, 875
TatI	WGTACW	2 cut(s)	69, 483
TfiI	GAWTC	4 cut(s)	500, 536, 730, 806
TscAI	CASTG	3 cut(s)	39, 384, 510
TseI	GCWGC	2 cut(s)	105, 202
TspDTI	ATGAA	4 cut(s)	161, 170, 582, 858
TspRI	CASTG	3 cut(s)	39, 384, 510
VpaK11BI	GGWCC	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	797
XbaI	TCTAGA	1 cut(s)	583
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.