Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

9169997 .. 9171350

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACTCCAAACCATAGCGTGATAGCCAGAGAAAACCAACAAAGAAACTCAGAAATGGCTATTCCAGTGATTGATCTGAATCAGTTTCCAGACTCTGAAGAGTACAAAAAACTGAGGGAAGCATCAGAGGAATGGGGTTGCTTCAGGCTAGTCAACCACAAGATCCCATTGACTCTGATGTCAGAGATGAAGATGGTGGTCAGATCTCTTCTTGATCTGCCCATGGAGATTAAGAAGAAGAACACTGATGTCATAGCTGGCAGTGGCTACATGGCGCCCAGCAAGGTCAACCCTCTCTATGAGGCTTTGGGTCTCTATGACTTGGGATCATCTCAGGCTGTGCAGACCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTATGCAGGAGCAATTTATGAGCAGATAGTGGATATAGGGCATAAGTTGGCAGAGAGTCTCGGTTTGAAGACCGGTTTTCTTAATGGGTGGCCTTGCCAGTTTAGGATAAACAAGTACAATTTCACTCCTGAATCCGTTGGATCTTGCGGAGTTCAGATGCACACAGATTCGAGTTTTCTGACAATTCTTCAAGATGATGAAAATGTTGGAGGTCTTGAAGTGATGAGCAAGTCTGGTGCTTTTGTACCAGTTGATCCTTGTCCAGGCACTCTCGTTGTCAATCTTGGAGACATTGCTAAGGCTTGGAGCAATGGTAGGCTGCTCAATTTGAAGCACAGAGTTCAATGCAGGGAGGCCACCATTCGAGTCTCCATTGCTACCTTTCTATTGGGACCAAAGGAGGAAGCACTGGAAGCTCCTCCGGAATTTGTTGATTCGGAGCATCCACGTCTCTATGTCCCTTTCACTTATGATGATTTCAGAAAGCTCAGAATCTCCAAAAAATTGCATGCTGGTGAAGCTCTAGAACTTGTGCGCATCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.27

Weight (kDa)

5.87

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	21 - 92	1.3e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 262	2.7e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
Acc16I	TGCGCA	1 cut(s)	935
AccB1I	GGYRCC	1 cut(s)	274
AccIII	TCCGGA	1 cut(s)	820
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	4 cut(s)	157, 334, 547, 647
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	2 cut(s)	117, 127
AcyI	GRCGYC	1 cut(s)	275
AfaI	GTAC	3 cut(s)	104, 515, 645
AfiI	CCNNNNNNNGG	2 cut(s)	385, 662
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	5 cut(s)	466, 590, 617, 730, 743
AjiI	CACGTC	1 cut(s)	848
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	4 cut(s)	257, 815, 886, 920
AluI	AGCT	4 cut(s)	257, 815, 886, 920
Alw26I	GTCTC	5 cut(s)	317, 461, 681, 772, 854
AlwI	GGATC	4 cut(s)	157, 334, 547, 647
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	820
AoxI	GGCC	2 cut(s)	488, 753
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	1 cut(s)	824
AsiGI	ACCGGT	1 cut(s)	470
AspLEI	GCGC	2 cut(s)	277, 936
AspS9I	GGNCC	1 cut(s)	791
AsuHPI	GGTGA	2 cut(s)	400, 926
AvaII	GGWCC	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	663
BcoDI	GTCTC	5 cut(s)	317, 461, 681, 772, 854
BfaI	CTAG	2 cut(s)	149, 923
BfoI	RGCGCY	1 cut(s)	278
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	720
Bme1390I	CCNGG	1 cut(s)	663
Bme18I	GGWCC	1 cut(s)	791
BmgBI	CACGTC	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	2 cut(s)	276, 792
BmrFI	CCNGG	1 cut(s)	663
BmsI	GCATC	4 cut(s)	131, 355, 546, 850
BpiI	GAAGAC	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	696
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	2 cut(s)	470, 820
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 662
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	4 cut(s)	65, 496, 647, 813
Bse3DI	GCAATG	3 cut(s)	690, 715, 771
Bse8I	GATNNNNATC	1 cut(s)	78
BseAI	TCCGGA	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	370, 841
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	385, 662
BseMI	GCAATG	3 cut(s)	690, 715, 771
BseMII	CTCAG	5 cut(s)	63, 104, 347, 371, 901
BseNI	ACTGG	4 cut(s)	65, 496, 647, 813
BseRI	GAGGAG	1 cut(s)	807
BseXI	GCAGC	1 cut(s)	705
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	490, 755
BshNI	GGYRCC	1 cut(s)	274
BshTI	ACCGGT	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	471, 821
BslFI	GGGAC	2 cut(s)	804, 842
BslI	CCNNNNNNNGG	2 cut(s)	385, 662
BsmAI	GTCTC	5 cut(s)	317, 461, 681, 772, 854
BsmBI	CGTCTC	1 cut(s)	854
BsmFI	GGGAC	2 cut(s)	804, 842
BsnI	GGCC	2 cut(s)	490, 755
Bso31I	GGTCTC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	820
Bsp143I	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	2 cut(s)	490, 755
BspCNI	CTCAG	5 cut(s)	62, 105, 346, 370, 900
BspEI	TCCGGA	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	276, 792
BspPI	GGATC	4 cut(s)	157, 334, 547, 647
BspT107I	GGYRCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	3 cut(s)	690, 715, 771
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	4 cut(s)	65, 496, 647, 813
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
BssNI	GRCGYC	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	663
Bst6I	CTCTTC	2 cut(s)	93, 213
BstACI	GRCGYC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	259, 909
BstDEI	CTNAG	6 cut(s)	49, 113, 333, 357, 696, 887
BstDSI	CCRYGG	1 cut(s)	222
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	370, 841
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	277, 936
BstKTI	GATC	7 cut(s)	76, 165, 206, 217, 329, 542, 655
BstMAI	GTCTC	5 cut(s)	317, 461, 681, 772, 854
BstMBI	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	812, 917
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	911
BstSCI	CCNGG	1 cut(s)	661
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	3 cut(s)	162, 203, 539
BstYI	RGATCY	3 cut(s)	162, 203, 539
BsuRI	GGCC	2 cut(s)	490, 755
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	370, 841
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	4 cut(s)	72, 243, 268, 806
Cac8I	GCNNGC	2 cut(s)	259, 909
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	277, 936
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	103, 514, 644
CspAI	ACCGGT	1 cut(s)	470
CviAII	CATG	3 cut(s)	223, 271, 908
CviQI	GTAC	3 cut(s)	103, 514, 644
DdeI	CTNAG	6 cut(s)	49, 113, 333, 357, 696, 887
DinI	GGCGCC	1 cut(s)	276
DpnI	GATC	7 cut(s)	75, 164, 205, 216, 328, 541, 654
DpnII	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	93, 213
EarI	CTCTTC	2 cut(s)	93, 213
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	791
Eco57I	CTGAAG	2 cut(s)	117, 127
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	222
EgeI	GGCGCC	1 cut(s)	276
EheI	GGCGCC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	854
FaeI	CATG	3 cut(s)	226, 274, 911
FaqI	GGGAC	2 cut(s)	804, 842
FatI	CATG	3 cut(s)	222, 270, 907
Fnu4HI	GCNGC	1 cut(s)	719
FokI	GGATG	2 cut(s)	377, 828
Fsp4HI	GCNGC	1 cut(s)	719
FspAI	RTGCGCAY	1 cut(s)	935
FspBI	CTAG	2 cut(s)	149, 923
FspI	TGCGCA	1 cut(s)	935
GlaI	GCGC	2 cut(s)	276, 935
GluI	GCNGC	1 cut(s)	719
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	490, 755
HapII	CCGG	2 cut(s)	471, 821
HhaI	GCGC	2 cut(s)	277, 936
Hin1I	GRCGYC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	226, 274, 911
Hin6I	GCGC	2 cut(s)	275, 934
HinP1I	GCGC	2 cut(s)	275, 934
HincII	GTYRAC	2 cut(s)	154, 289
HindII	GTYRAC	2 cut(s)	154, 289
HpaII	CCGG	2 cut(s)	471, 821
HphI	GGTGA	2 cut(s)	400, 926
Hpy166II	GTNNAC	2 cut(s)	154, 289
Hpy188III	TCNNGA	7 cut(s)	89, 212, 527, 590, 614, 821, 923
Hpy8I	GTNNAC	2 cut(s)	154, 289
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	5 cut(s)	343, 404, 559, 747, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	812, 917
HpyF3I	CTNAG	6 cut(s)	49, 113, 333, 357, 696, 887
HpySE526I	ACGT	1 cut(s)	847
Hsp92I	GRCGYC	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	226, 274, 911
HspAI	GCGC	2 cut(s)	275, 934
KasI	GGCGCC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	820
Kzo9I	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
LmnI	GCTCC	4 cut(s)	407, 705, 820, 838
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	4 cut(s)	131, 355, 546, 850
MaeI	CTAG	2 cut(s)	149, 923
MaeII	ACGT	1 cut(s)	847
MalI	GATC	7 cut(s)	75, 164, 205, 216, 328, 541, 654
MboI	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
MboII	GAAGA	8 cut(s)	110, 200, 202, 247, 250, 363, 478, 578
MflI	RGATCY	3 cut(s)	162, 203, 539
MluCI	AATT	6 cut(s)	411, 517, 582, 724, 824, 902
Mly113I	GGCGCC	1 cut(s)	275
MlyI	GAGTC	4 cut(s)	86, 166, 463, 774
MmeI	TCCRAC	3 cut(s)	342, 517, 586
MnlI	CCTC	9 cut(s)	108, 121, 295, 303, 379, 602, 745, 793, 828
MroI	TCCGGA	1 cut(s)	820
MseI	TTAA	3 cut(s)	231, 480, 946
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	2 cut(s)	471, 821
MspR9I	CCNGG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	812, 917
NarI	GGCGCC	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
NlaIII	CATG	3 cut(s)	226, 274, 911
NlaIV	GGNNCC	2 cut(s)	276, 792
NsbI	TGCGCA	1 cut(s)	935
NspI	RCATGY	1 cut(s)	911
PaeI	GCATGC	1 cut(s)	911
PfeI	GAWTC	5 cut(s)	79, 530, 566, 833, 891
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	1 cut(s)	720
PleI	GAGTC	4 cut(s)	86, 166, 462, 773
PluTI	GGCGCC	1 cut(s)	278
PpsI	GAGTC	4 cut(s)	86, 166, 462, 773
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	2 cut(s)	276, 792
PspPI	GGNCC	1 cut(s)	791
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	3 cut(s)	162, 203, 539
RsaI	GTAC	3 cut(s)	104, 515, 645
RsaNI	GTAC	3 cut(s)	103, 514, 644
RseI	CAYNNNNRTG	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	231, 480, 946
SatI	GCNGC	1 cut(s)	719
Sau3AI	GATC	7 cut(s)	73, 162, 203, 214, 326, 539, 652
Sau96I	GGNCC	1 cut(s)	791
SchI	GAGTC	4 cut(s)	86, 166, 463, 774
ScrFI	CCNGG	1 cut(s)	663
SfaNI	GCATC	4 cut(s)	131, 355, 546, 850
SfoI	GGCGCC	1 cut(s)	276
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	912
SphI	GCATGC	1 cut(s)	911
Sse9I	AATT	6 cut(s)	411, 517, 582, 724, 824, 902
SsiI	CCGC	1 cut(s)	546
SspDI	GGCGCC	1 cut(s)	274
SspMI	CTAG	2 cut(s)	149, 923
StyD4I	CCNGG	1 cut(s)	661
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	2 cut(s)	569, 763
TasI	AATT	6 cut(s)	411, 517, 582, 724, 824, 902
TatI	WGTACW	2 cut(s)	102, 513
TfiI	GAWTC	5 cut(s)	79, 530, 566, 833, 891
Tru1I	TTAA	3 cut(s)	231, 480, 946
Tru9I	TTAA	3 cut(s)	231, 480, 946
TscAI	CASTG	4 cut(s)	72, 250, 268, 813
TseI	GCWGC	1 cut(s)	718
TspDTI	ATGAA	2 cut(s)	203, 612
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	4 cut(s)	72, 250, 268, 813
VpaK11BI	GGWCC	1 cut(s)	791
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	1 cut(s)	824
XbaI	TCTAGA	1 cut(s)	922
XceI	RCATGY	1 cut(s)	911
XspI	CTAG	2 cut(s)	149, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.