Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

5908803 .. 5910409

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGGATGCTTCAGGCTTGTGAACCACATGATCCCACCGGCTCTGATGTCGGAGATGAAATCAGTGGTCAGATCTTTGATGGACCTGTCCATGGATCGATCAAGAAGCAGAACAAGGATGTGATAGCGGGCAGTGGATACATGGCTCCCAATAAACTCAACCCTCTCTTCGAATCTTTGGGGCTCTACGACTTGGGATCGAGTCAAGCTGTCGATAGCTTTTGTTCTCAGTTGAATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTATGCTCAAGCAGTGTATGAGCAGATTGTGGACATAGGAAAAAGGTTGGCAGAGAGTTTAGGGTTGGTTGATGGTGATTATCTCAAGGGGTGGCCCTGCCAATTCAGGATAAACAAGTACAACTTCACTCCTGAATCAGTTGGATCCTCTGGTGTAATTTTACACACAGACTCAGGATTTCTAACCATAGTTCAAGACGATGAAGATGTCGGTGGTTTGGAAGTGATGGACAAATCCGGCGCCTTTGTAGCCGTTGATCCTTGCCCAGGCACTCTCCTTGTTAATCTAGGGGACGTTGCTAAGGCATGGAGCAACGGGAGGGTGTGCAATGTGAAGCATAGAGTACAATGCAGGGAGGCAACAATTCGATTTTCGATCTCTACATTCCTCTTGGGACCGAAGGAGAAGGCGGTAGTGGAAGCTCCGGCGGAGTTTGTGGATTCCGAGCATCCTCGACTTTACGTTCCTTTTACTTACGAAGATTACAGAAAGCTCATGTTCTCCACAAAACAACCTACTGGTGAAGCCCTTGCACTCATGCGCACCCCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

275

Amino Acids

29.93

Weight (kDa)

4.94

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	3 cut(s)	128, 680, 698
AclWI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	2 cut(s)	389, 615
AfiI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
AgsI	TTSAA	2 cut(s)	235, 464
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	4 cut(s)	209, 219, 692, 763
AluI	AGCT	4 cut(s)	209, 219, 692, 763
AlwI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AoxI	GGCC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	512, 813
AspS9I	GGNCC	3 cut(s)	83, 363, 665
AsuHPI	GGTGA	3 cut(s)	271, 356, 803
AsuII	TTCGAA	1 cut(s)	171
AvaII	GGWCC	2 cut(s)	83, 665
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	186
BccI	CCATC	3 cut(s)	74, 335, 490
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	2 cut(s)	83, 665
BmgT120I	GGNCC	3 cut(s)	83, 363, 665
BmiI	GGNNCC	4 cut(s)	147, 415, 511, 666
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	727
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	261, 338
Bsa29I	ATCGAT	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	91, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 256, 536
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	793
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	91, 535
BseGI	GGATG	3 cut(s)	12, 124, 718
BseLI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	242, 456
BseNI	ACTGG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	39, 507, 695
BslFI	GGGAC	2 cut(s)	575, 678
BslI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BsmFI	GGGAC	2 cut(s)	575, 678
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	3 cut(s)	128, 680, 698
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	241, 455
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	147, 415, 511, 666
BspPI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	793
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	91, 535
BssMI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	537
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	228, 442, 570
BstDSI	CCRYGG	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	3 cut(s)	12, 124, 718
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	512, 813
BstKTI	GATC	8 cut(s)	34, 75, 98, 102, 200, 416, 529, 648
BstMBI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	72, 413
BstYI	RGATCY	2 cut(s)	72, 413
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	364
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	12, 124, 718
BtsI	GCAGTG	2 cut(s)	139, 288
BtsIMutI	CAGTG	3 cut(s)	70, 139, 288
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	512, 813
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	83, 363, 665
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	388, 614
CviAII	CATG	6 cut(s)	29, 92, 142, 576, 766, 808
CviQI	GTAC	2 cut(s)	388, 614
DdeI	CTNAG	3 cut(s)	228, 442, 570
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	8 cut(s)	33, 74, 97, 101, 199, 415, 528, 647
DpnII	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	83, 665
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	6 cut(s)	32, 95, 145, 579, 769, 811
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	2 cut(s)	575, 678
FatI	CATG	6 cut(s)	28, 91, 141, 575, 765, 807
FauI	CCCGC	1 cut(s)	121
FokI	GGATG	3 cut(s)	19, 131, 705
FriOI	GRGCYC	1 cut(s)	186
FspAI	RTGCGCAY	1 cut(s)	812
FspBI	CTAG	1 cut(s)	557
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	2 cut(s)	511, 812
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	3 cut(s)	39, 507, 695
HhaI	GCGC	2 cut(s)	512, 813
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	32, 95, 145, 579, 769, 811
Hin6I	GCGC	2 cut(s)	510, 811
HinP1I	GCGC	2 cut(s)	510, 811
HinfI	GANTC	5 cut(s)	173, 202, 404, 440, 710
HpaII	CCGG	3 cut(s)	39, 507, 695
HphI	GGTGA	3 cut(s)	271, 356, 803
Hpy166II	GTNNAC	2 cut(s)	23, 301
Hpy188I	TCNGA	4 cut(s)	46, 53, 72, 715
Hpy188III	TCNNGA	5 cut(s)	103, 376, 401, 444, 464
Hpy8I	GTNNAC	2 cut(s)	23, 301
HpyAV	CCTTC	2 cut(s)	664, 670
HpyCH4IV	ACGT	2 cut(s)	564, 732
HpyCH4V	TGCA	3 cut(s)	597, 621, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	228, 442, 570
HpySE526I	ACGT	2 cut(s)	564, 732
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	32, 95, 145, 579, 769, 811
HspAI	GCGC	2 cut(s)	510, 811
KasI	GGCGCC	1 cut(s)	509
Kzo9I	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
LmnI	GCTCC	3 cut(s)	151, 579, 697
LweI	GCATC	1 cut(s)	727
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	2 cut(s)	564, 732
MalI	GATC	8 cut(s)	33, 74, 97, 101, 199, 415, 528, 647
MboI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
MboII	GAAGA	4 cut(s)	160, 234, 485, 761
MflI	RGATCY	2 cut(s)	72, 413
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	3 cut(s)	371, 426, 633
Mly113I	GGCGCC	1 cut(s)	510
MlyI	GAGTC	2 cut(s)	211, 434
MmeI	TCCRAC	2 cut(s)	31, 391
MnlI	CCTC	7 cut(s)	174, 250, 427, 582, 619, 668, 732
MseI	TTAA	1 cut(s)	552
MspI	CCGG	3 cut(s)	39, 507, 695
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	518
NarI	GGCGCC	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
NlaIII	CATG	6 cut(s)	32, 95, 145, 579, 769, 811
NlaIV	GGNNCC	4 cut(s)	147, 415, 511, 666
NsbI	TGCGCA	1 cut(s)	812
NspV	TTCGAA	1 cut(s)	171
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	173, 404, 710
PleI	GAGTC	2 cut(s)	210, 434
PluTI	GGCGCC	1 cut(s)	513
PpsI	GAGTC	2 cut(s)	210, 434
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	147, 415, 511, 666
PspPI	GGNCC	3 cut(s)	83, 363, 665
PsuI	RGATCY	2 cut(s)	72, 413
RsaI	GTAC	2 cut(s)	389, 615
RsaNI	GTAC	2 cut(s)	388, 614
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Sau96I	GGNCC	3 cut(s)	83, 363, 665
SchI	GAGTC	2 cut(s)	211, 434
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	727
SfoI	GGCGCC	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	171
SinI	GGWCC	2 cut(s)	83, 665
SmlI	CTYRAG	2 cut(s)	276, 353
SmoI	CTYRAG	2 cut(s)	276, 353
Sse9I	AATT	3 cut(s)	371, 426, 633
SsiI	CCGC	3 cut(s)	128, 680, 698
SspDI	GGCGCC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	2 cut(s)	567, 735
TaqI	TCGA	7 cut(s)	98, 171, 200, 213, 637, 644, 724
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	3 cut(s)	371, 426, 633
TatI	WGTACW	2 cut(s)	387, 613
TfiI	GAWTC	3 cut(s)	173, 404, 710
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	3 cut(s)	70, 139, 288
TspDTI	ATGAA	2 cut(s)	72, 486
TspRI	CASTG	3 cut(s)	70, 139, 288
VpaK11BI	GGWCC	2 cut(s)	83, 665
XagI	CCTNNNNNAGG	1 cut(s)	534
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.