Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000395.1

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

24227 .. 25815

Gene Structure 1589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000395.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggcaaatccaattccagtgattgatctgagtcagtttcctgcttctggtgagtacgataagcttaggttagcatcagaggaatggggttgcttccggcttctcaaccacaagatcccattgcctctgatggcagagatgaagatagtggtaagatctctccttgatctgcccatggagatcaagaagaacaacactgatgtcatagctggcagtggctacatggcaccgagcaaggtcaacccgctctatgaggctttaggtctctatgacttgggctcatctcaggctgtgcagaccttttgctctcagttgcatgcttcttcctaccagagagaggtgatcgagaagtatgcaggagcagtttatgagcagatggtggatatagggcaaaagttggcagagagtctcggattgtggagtgattttctgaagggatgggcttgccagtttaggatcaacaagtacaacttcactcctgaatccgttggatcttccggtgttcagatacacacagatgcgggatttctgacaattcttcaagatgatgaaaatgttggtggtcttgaagtaatggacaaagaggtgatcgagaagtatgcaggagcagtttatgagcagatggtggatatagggcaaaagttggcagagaggctcggattgtggagtaattttcttaagggatgggcttgccagtttaggatcaacaagtacaacttcactcctgaatccgttggatcttccggagttcagatacacacagatgcgggatttctgacaattcttcaagatgatgaaaatgttggtggtcttgaagtaatggacaagtctggtgcttttgtaccagttgatccttatccaggcactctcattgtcaatcttggagacacggctaaggtaggtaggataagccataggataagccaaaattcttattcttacatgcatcttgttgttgctggtattaacattaaggcatggagcaatgggaggctgagcaatgtcaagcatagagttcaatgcagggaagccaccattcgagtctccattgcttcatttctgttgggaccgaaggaggaagcagtggaagccccaccagaatttgttgattcggatcacccccgtctgtatgtccctgtcactcatgaagagtacaggaagctcagactttccaaatgcttgcatgccggtgaagctcttgaacttctgcgcatcaagtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

407

Amino Acids

45.25

Weight (kDa)

5.65

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1211
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	743
AciI	CCGC	3 cut(s)	245, 521, 767
AclWI	GGATC	7 cut(s)	109, 464, 499, 710, 745, 845, 1122
AcsI	RAATTY	2 cut(s)	928, 1100
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	5 cut(s)	56, 467, 713, 843, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	47, 337, 860
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	6 cut(s)	542, 569, 788, 815, 1019, 1202
AjnI	CCWGG	1 cut(s)	859
AluBI	AGCT	4 cut(s)	64, 209, 1162, 1196
AluI	AGCT	4 cut(s)	64, 209, 1162, 1196
Alw26I	GTCTC	4 cut(s)	269, 413, 879, 1048
AlwI	GGATC	7 cut(s)	109, 464, 499, 710, 745, 845, 1122
Aor13HI	TCCGGA	1 cut(s)	743
ApoI	RAATTY	2 cut(s)	928, 1100
AspLEI	GCGC	1 cut(s)	1212
AspS9I	GGNCC	1 cut(s)	1067
AsuHPI	GGTGA	5 cut(s)	62, 352, 598, 1109, 1202
AvaII	GGWCC	1 cut(s)	1067
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	281
BccI	CCATC	5 cut(s)	124, 370, 432, 616, 678
BceAI	ACGGC	1 cut(s)	906
BcgI	CGANNNNNNTGC	4 cut(s)	335, 369, 581, 615
BciT130I	CCWGG	1 cut(s)	861
BcoDI	GTCTC	4 cut(s)	269, 413, 879, 1048
BfrI	CTTAAG	1 cut(s)	677
BglII	AGATCT	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	995
Bme1390I	CCNGG	1 cut(s)	861
Bme18I	GGWCC	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	2 cut(s)	228, 1068
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	4 cut(s)	83, 508, 754, 955
Bpu10I	CCTNAGC	2 cut(s)	65, 894
Bpu1102I	GCTNAGC	1 cut(s)	995
BsaBI	GATNNNNATC	2 cut(s)	855, 1113
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	497, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 337, 860
Bse118I	RCCGGY	1 cut(s)	1187
Bse1I	ACTGG	4 cut(s)	17, 448, 694, 845
Bse3DI	GCAATG	4 cut(s)	119, 991, 1006, 1047
Bse8I	GATNNNNATC	2 cut(s)	855, 1113
BseAI	TCCGGA	1 cut(s)	743
BseBI	CCWGG	1 cut(s)	861
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	443, 689
BseJI	GATNNNNATC	2 cut(s)	855, 1113
BseLI	CCNNNNNNNGG	3 cut(s)	47, 337, 860
BseMI	GCAATG	4 cut(s)	119, 991, 1006, 1047
BseMII	CTCAG	5 cut(s)	20, 299, 323, 986, 1177
BseNI	ACTGG	4 cut(s)	17, 448, 694, 845
BsgI	GTGCAG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	4 cut(s)	97, 498, 744, 1188
BslFI	GGGAC	2 cut(s)	1080, 1118
BslI	CCNNNNNNNGG	3 cut(s)	47, 337, 860
BsmAI	GTCTC	4 cut(s)	269, 413, 879, 1048
BsmFI	GGGAC	2 cut(s)	1080, 1118
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	743
Bsp1720I	GCTNAGC	1 cut(s)	995
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	3 cut(s)	245, 521, 767
BspCNI	CTCAG	5 cut(s)	21, 298, 322, 987, 1176
BspEI	TCCGGA	1 cut(s)	743
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	2 cut(s)	228, 1068
BspPI	GGATC	7 cut(s)	109, 464, 499, 710, 745, 845, 1122
BspT107I	GGYRCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	4 cut(s)	119, 991, 1006, 1047
BsrFI	RCCGGY	1 cut(s)	1187
BsrI	ACTGG	4 cut(s)	17, 448, 694, 845
BssAI	RCCGGY	1 cut(s)	1187
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	861
Bst6I	CTCTTC	1 cut(s)	1143
BstAFI	CTTAAG	1 cut(s)	677
BstC8I	GCNNGC	6 cut(s)	211, 318, 445, 691, 1181, 1185
BstDEI	CTNAG	7 cut(s)	29, 65, 285, 309, 894, 995, 1163
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	858
BstF5I	GGATG	2 cut(s)	443, 689
BstHHI	GCGC	1 cut(s)	1212
BstMAI	GTCTC	4 cut(s)	269, 413, 879, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	1088, 1193
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	3 cut(s)	320, 946, 1187
BstSCI	CCNGG	1 cut(s)	859
BstX2I	RGATCY	4 cut(s)	114, 155, 491, 737
BstYI	RGATCY	4 cut(s)	114, 155, 491, 737
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	443, 689
BtsI	GCAGTG	2 cut(s)	220, 1089
BtsIMutI	CAGTG	4 cut(s)	24, 195, 220, 1089
Cac8I	GCNNGC	6 cut(s)	211, 318, 445, 691, 1181, 1185
CciI	TCATGA	1 cut(s)	1144
CfoI	GCGC	1 cut(s)	1212
Cfr10I	RCCGGY	1 cut(s)	1187
Cfr13I	GGNCC	1 cut(s)	1067
Csp6I	GTAC	5 cut(s)	55, 466, 712, 842, 1153
CviAII	CATG	7 cut(s)	175, 223, 317, 943, 978, 1145, 1184
CviQI	GTAC	5 cut(s)	55, 466, 712, 842, 1153
DdeI	CTNAG	7 cut(s)	29, 65, 285, 309, 894, 995, 1163
Eam1104I	CTCTTC	1 cut(s)	1143
EarI	CTCTTC	1 cut(s)	1143
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	1067
Eco57I	CTGAAG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	858
EcoRII	CCWGG	1 cut(s)	859
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	7 cut(s)	178, 226, 320, 946, 981, 1148, 1187
FalI	AAGNNNNNCTT	4 cut(s)	455, 487, 701, 733
FaqI	GGGAC	2 cut(s)	1080, 1118
FatI	CATG	7 cut(s)	174, 222, 316, 942, 977, 1144, 1183
FauI	CCCGC	3 cut(s)	252, 514, 760
FokI	GGATG	2 cut(s)	450, 696
FriOI	GRGCYC	1 cut(s)	281
FspI	TGCGCA	1 cut(s)	1211
GlaI	GCGC	1 cut(s)	1211
HapII	CCGG	4 cut(s)	97, 498, 744, 1188
HhaI	GCGC	1 cut(s)	1212
Hin1II	CATG	7 cut(s)	178, 226, 320, 946, 981, 1148, 1187
Hin6I	GCGC	1 cut(s)	1210
HinP1I	GCGC	1 cut(s)	1210
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	6 cut(s)	31, 406, 482, 728, 1041, 1109
HpaII	CCGG	4 cut(s)	97, 498, 744, 1188
HphI	GGTGA	5 cut(s)	62, 352, 598, 1109, 1202
Hpy166II	GTNNAC	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	427, 1066
HpyCH4V	TGCA	7 cut(s)	295, 316, 356, 602, 946, 1023, 1183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1088, 1193
HpyF3I	CTNAG	7 cut(s)	29, 65, 285, 309, 894, 995, 1163
Hsp92II	CATG	7 cut(s)	178, 226, 320, 946, 981, 1148, 1187
HspAI	GCGC	1 cut(s)	1210
Kpn2I	TCCGGA	1 cut(s)	743
LmnI	GCTCC	3 cut(s)	359, 605, 981
LweI	GCATC	4 cut(s)	83, 508, 754, 955
MaeIII	GTNAC	1 cut(s)	1138
MbiI	CCGCTC	1 cut(s)	247
MboII	GAAGA	8 cut(s)	154, 199, 315, 486, 530, 732, 776, 1160
MflI	RGATCY	4 cut(s)	114, 155, 491, 737
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	6 cut(s)	12, 534, 670, 780, 928, 1100
MlyI	GAGTC	3 cut(s)	40, 415, 1050
MmeI	TCCRAC	2 cut(s)	469, 715
MnlI	CCTC	8 cut(s)	73, 135, 247, 331, 577, 645, 984, 1069
Mph1103I	ATGCAT	1 cut(s)	948
MroI	TCCGGA	1 cut(s)	743
MseI	TTAA	3 cut(s)	678, 966, 972
MslI	CAYNNNNRTG	3 cut(s)	516, 762, 1188
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	4 cut(s)	97, 498, 744, 1188
MspR9I	CCNGG	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	861
MwoI	GCNNNNNNNGC	2 cut(s)	1088, 1193
NcoI	CCATGG	1 cut(s)	174
NlaIII	CATG	7 cut(s)	178, 226, 320, 946, 981, 1148, 1187
NlaIV	GGNNCC	2 cut(s)	228, 1068
NmuCI	GTSAC	1 cut(s)	1138
NsbI	TGCGCA	1 cut(s)	1211
NsiI	ATGCAT	1 cut(s)	948
NspI	RCATGY	3 cut(s)	320, 946, 1187
PaeI	GCATGC	2 cut(s)	320, 1187
PagI	TCATGA	1 cut(s)	1144
PfeI	GAWTC	3 cut(s)	482, 728, 1109
PleI	GAGTC	3 cut(s)	39, 414, 1049
PpsI	GAGTC	3 cut(s)	39, 414, 1049
Psp6I	CCWGG	1 cut(s)	859
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	2 cut(s)	228, 1068
PspPI	GGNCC	1 cut(s)	1067
PsuI	RGATCY	4 cut(s)	114, 155, 491, 737
RsaI	GTAC	5 cut(s)	56, 467, 713, 843, 1154
RsaNI	GTAC	5 cut(s)	55, 466, 712, 842, 1153
RseI	CAYNNNNRTG	3 cut(s)	516, 762, 1188
SaqAI	TTAA	3 cut(s)	678, 966, 972
Sau96I	GGNCC	1 cut(s)	1067
SchI	GAGTC	3 cut(s)	40, 415, 1050
ScrFI	CCNGG	1 cut(s)	861
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	4 cut(s)	83, 508, 754, 955
SinI	GGWCC	1 cut(s)	1067
SmiMI	CAYNNNNRTG	3 cut(s)	516, 762, 1188
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SphI	GCATGC	2 cut(s)	320, 1187
Sse9I	AATT	6 cut(s)	12, 534, 670, 780, 928, 1100
SsiI	CCGC	3 cut(s)	245, 521, 767
StyD4I	CCNGG	1 cut(s)	859
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	3 cut(s)	345, 591, 1039
TaqII	GACCGA	1 cut(s)	1084
TasI	AATT	6 cut(s)	12, 534, 670, 780, 928, 1100
TatI	WGTACW	3 cut(s)	465, 711, 1152
TfiI	GAWTC	3 cut(s)	482, 728, 1109
Tru1I	TTAA	3 cut(s)	678, 966, 972
Tru9I	TTAA	3 cut(s)	678, 966, 972
TscAI	CASTG	4 cut(s)	24, 202, 220, 1089
TseFI	GTSAC	1 cut(s)	1138
Tsp45I	GTSAC	1 cut(s)	1138
TspDTI	ATGAA	5 cut(s)	155, 564, 810, 1044, 1161
TspGWI	ACGGA	2 cut(s)	475, 721
TspRI	CASTG	4 cut(s)	24, 202, 220, 1089
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	1067
XagI	CCTNNNNNAGG	1 cut(s)	858
XapI	RAATTY	2 cut(s)	928, 1100
XceI	RCATGY	3 cut(s)	320, 946, 1187
Zsp2I	ATGCAT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.