Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

67206213 .. 67208364

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG513600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCAAATCCAATTCCAGTGATTGATCTGAGTCAGTTTCCTGCTTCTGGTGAGTACGATAAGCTTAGGTTAGCATCAGAGGAATGGGGTTGCTTCCGGCTCCTCAACCACAAGATCCCATTGCCTCTGATGGCAGAGATGAAGATAGTGGTAAGATCTCTCCTTGATCTGCCCATGGAGATCAAGAAGAACAACACTGATGTCATAGCTGGCAGTGGCTACATGGCACCGAGCAAGGTCAACCCGCTCTACGAGGCTTTAGGTCTCTATGACTTGGGCTCATCTCAGGCTGTGCAGACCTTTTGCTCTCAGTTGCATGCTTCTTCCTACCAGAGAGAGGTGATCGAGAAGTATGCAGGAGCAGTTTATGAGCAGATGGTGGATATAGGGCATAAGTTGGCAGAGAGTCTCGGATTGTGGAGTGATTTTCTGAAGGGATGGGCTTGCCAGTTTAGGATCAACAAATACAACTTCACTCCTGAATCCGTTGGATCTTCCGGTGTTCAAATACACACAGATGCGGGATTTCTGACAATTCTTCAAGATGATGAAAATGTTGGAGGTCTTGAAGTAATGGACAAATCTGGTGCTTTTGTACCAGTTGATCCTTATCCAGGCACTCTCATTGTCAATCTTGGAGACACGGCTAAGGTAGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

220

Amino Acids

24.13

Weight (kDa)

4.98

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	5 - 76	4e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	149 - 216	1e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	247
AciI	CCGC	2 cut(s)	245, 521
AclWI	GGATC	4 cut(s)	109, 464, 499, 599
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	56, 597
AfiI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
AgsI	TTSAA	3 cut(s)	506, 542, 569
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	2 cut(s)	64, 209
AluI	AGCT	2 cut(s)	64, 209
Alw26I	GTCTC	3 cut(s)	269, 413, 633
AlwI	GGATC	4 cut(s)	109, 464, 499, 599
AsuHPI	GGTGA	2 cut(s)	62, 352
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	281
BccI	CCATC	3 cut(s)	124, 370, 432
BceAI	ACGGC	1 cut(s)	660
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	3 cut(s)	269, 413, 633
BglII	AGATCT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	615
BmiI	GGNNCC	2 cut(s)	101, 228
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	83, 508
Bpu10I	CCTNAGC	2 cut(s)	65, 648
BsaBI	GATNNNNATC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 337, 614
Bse1I	ACTGG	3 cut(s)	17, 448, 599
Bse3DI	GCAATG	1 cut(s)	119
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	20, 299, 323
BseNI	ACTGG	3 cut(s)	17, 448, 599
BseRI	GAGGAG	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	97, 498
BslI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
BsmAI	GTCTC	3 cut(s)	269, 413, 633
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	245, 521
BspCNI	CTCAG	3 cut(s)	21, 298, 322
BspLI	GGNNCC	2 cut(s)	101, 228
BspPI	GGATC	4 cut(s)	109, 464, 499, 599
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	17, 448, 599
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	211, 318, 445
BstDEI	CTNAG	5 cut(s)	29, 65, 285, 309, 648
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	443
BstKTI	GATC	9 cut(s)	28, 117, 158, 169, 183, 345, 459, 494, 607
BstMAI	GTCTC	3 cut(s)	269, 413, 633
BstMBI	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	613
BstX2I	RGATCY	3 cut(s)	114, 155, 491
BstYI	RGATCY	3 cut(s)	114, 155, 491
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	443
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	3 cut(s)	24, 195, 220
Cac8I	GCNNGC	3 cut(s)	211, 318, 445
Csp6I	GTAC	2 cut(s)	55, 596
CviAII	CATG	3 cut(s)	175, 223, 317
CviJI	RGCY	9 cut(s)	64, 100, 209, 219, 257, 279, 290, 443, 647
CviKI_1	RGCY	9 cut(s)	64, 100, 209, 219, 257, 279, 290, 443, 647
CviQI	GTAC	2 cut(s)	55, 596
DdeI	CTNAG	5 cut(s)	29, 65, 285, 309, 648
DpnI	GATC	9 cut(s)	27, 116, 157, 168, 182, 344, 458, 493, 606
DpnII	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	178, 226, 320
FaiI	YATR	9 cut(s)	176, 206, 224, 270, 318, 354, 369, 386, 393
FatI	CATG	3 cut(s)	174, 222, 316
FauI	CCCGC	2 cut(s)	252, 514
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	281
HapII	CCGG	2 cut(s)	97, 498
Hin1II	CATG	3 cut(s)	178, 226, 320
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	3 cut(s)	31, 406, 482
HpaII	CCGG	2 cut(s)	97, 498
HphI	GGTGA	2 cut(s)	62, 352
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	6 cut(s)	30, 79, 129, 413, 432, 531
Hpy188III	TCNNGA	5 cut(s)	184, 346, 479, 542, 566
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	295, 316, 356
HpyF3I	CTNAG	5 cut(s)	29, 65, 285, 309, 648
Hsp92II	CATG	3 cut(s)	178, 226, 320
Kzo9I	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
LmnI	GCTCC	2 cut(s)	105, 359
LweI	GCATC	2 cut(s)	83, 508
MalI	GATC	9 cut(s)	27, 116, 157, 168, 182, 344, 458, 493, 606
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
MboII	GAAGA	5 cut(s)	154, 199, 315, 486, 530
MflI	RGATCY	3 cut(s)	114, 155, 491
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	2 cut(s)	12, 534
MlyI	GAGTC	2 cut(s)	40, 415
MmeI	TCCRAC	2 cut(s)	469, 538
MnlI	CCTC	6 cut(s)	73, 113, 135, 247, 331, 554
MslI	CAYNNNNRTG	1 cut(s)	516
MspI	CCGG	2 cut(s)	97, 498
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
NlaIII	CATG	3 cut(s)	178, 226, 320
NlaIV	GGNNCC	2 cut(s)	101, 228
NspI	RCATGY	1 cut(s)	320
PaeI	GCATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	482
PleI	GAGTC	2 cut(s)	39, 414
PpsI	GAGTC	2 cut(s)	39, 414
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	101, 228
PsuI	RGATCY	3 cut(s)	114, 155, 491
RsaI	GTAC	2 cut(s)	56, 597
RsaNI	GTAC	2 cut(s)	55, 596
RseI	CAYNNNNRTG	1 cut(s)	516
Sau3AI	GATC	9 cut(s)	25, 114, 155, 166, 180, 342, 456, 491, 604
SchI	GAGTC	2 cut(s)	40, 415
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	83, 508
SmiMI	CAYNNNNRTG	1 cut(s)	516
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	2 cut(s)	12, 534
SsiI	CCGC	2 cut(s)	245, 521
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	1 cut(s)	345
TasI	AATT	2 cut(s)	12, 534
TfiI	GAWTC	1 cut(s)	482
TscAI	CASTG	3 cut(s)	24, 202, 220
TspDTI	ATGAA	2 cut(s)	155, 564
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	3 cut(s)	24, 202, 220
XagI	CCTNNNNNAGG	1 cut(s)	612
XceI	RCATGY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.