Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407901.1

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

149 .. 1305

Gene Structure 1157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407901.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgaagatggtggtcagatctcttcttgatctgcccatggagattaagaagaagaactctgatgtcatagctggcagtggctacatggcgcctagcaaggtcaaccctctctatgaggctttgggtctctatgacttgggatcatctcaggctgtgcagaccttttgctctcagttggatgcttcttcctaccagagagaggtgatagagaagtatgcaggagcaatttatgagcagatagtggatatagggcataagttggcagagagtctcggtttgaagaccggttttcttaatgggtggccttgccagtttaggataaacaagtacaatttcactcctgaatccgttggatcttgcggagttcagatgcacacagattcgagttttgtgacaattcttcaagatgatgaaaatgttggaggtcttgaagtgatgagcaagtctggtgcttttgtaccagttgatccttgtccaggctctctcgttgtcaatcttggagacattgctaaggcttggagcaatgggaggctgctcaatttgaagcacagagttcaatgcagggaggccaccattcgagtctccattgctacctttctattgggaccaaaggaggaagcactggaagctcctccggaatttgttgattcggagcatccacgtctctatgtccctttcacttatgatgatttcagaaagctcagaatctccaaaaaattgcatgctggtgaagctctagaacttgtgcgcatcaagtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

253

Amino Acids

27.97

Weight (kDa)

6.23

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	749
AccB1I	GGYRCC	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	3 cut(s)	148, 361, 461
AcsI	RAATTY	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	2 cut(s)	329, 459
AfiI	CCNNNNNNNGG	2 cut(s)	199, 476
AgeI	ACCGGT	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	280, 404, 431, 544, 557
AjiI	CACGTC	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	4 cut(s)	71, 629, 700, 734
AluI	AGCT	4 cut(s)	71, 629, 700, 734
Alw26I	GTCTC	5 cut(s)	131, 275, 495, 586, 668
AlwI	GGATC	3 cut(s)	148, 361, 461
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	2 cut(s)	302, 567
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	638
AsiGI	ACCGGT	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	91, 750
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	2 cut(s)	214, 740
AvaII	GGWCC	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	519
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	5 cut(s)	131, 275, 495, 586, 668
BfaI	CTAG	2 cut(s)	93, 737
BfoI	RGCGCY	1 cut(s)	92
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	605
BmgBI	CACGTC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	90, 606
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	169, 360, 664
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	2 cut(s)	284, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 476
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	310, 461, 627
Bse3DI	GCAATG	3 cut(s)	504, 529, 585
BseAI	TCCGGA	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	184, 655
BseLI	CCNNNNNNNGG	2 cut(s)	199, 476
BseMI	GCAATG	3 cut(s)	504, 529, 585
BseMII	CTCAG	3 cut(s)	161, 185, 715
BseNI	ACTGG	3 cut(s)	310, 461, 627
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	519
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	304, 569
BshNI	GGYRCC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	285, 635
BslFI	GGGAC	2 cut(s)	618, 656
BslI	CCNNNNNNNGG	2 cut(s)	199, 476
BsmAI	GTCTC	5 cut(s)	131, 275, 495, 586, 668
BsmBI	CGTCTC	1 cut(s)	668
BsmFI	GGGAC	2 cut(s)	618, 656
BsnI	GGCC	2 cut(s)	304, 569
Bso31I	GGTCTC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	5 cut(s)	17, 28, 140, 353, 466
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	304, 569
BspCNI	CTCAG	3 cut(s)	160, 184, 714
BspEI	TCCGGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	90, 606
BspPI	GGATC	3 cut(s)	148, 361, 461
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	3 cut(s)	504, 529, 585
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	310, 461, 627
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	17, 28, 140, 353, 466
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	477
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	73, 723
BstDEI	CTNAG	4 cut(s)	147, 171, 510, 701
BstDSI	CCRYGG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	184, 655
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 750
BstKTI	GATC	5 cut(s)	20, 31, 143, 356, 469
BstMAI	GTCTC	5 cut(s)	131, 275, 495, 586, 668
BstMBI	GATC	5 cut(s)	17, 28, 140, 353, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 731
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	17, 353
BstYI	RGATCY	2 cut(s)	17, 353
BsuRI	GGCC	2 cut(s)	304, 569
BtgI	CCRYGG	1 cut(s)	36
BtrI	CACGTC	1 cut(s)	662
BtsCI	GGATG	2 cut(s)	184, 655
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 620
Cac8I	GCNNGC	2 cut(s)	73, 723
CfoI	GCGC	2 cut(s)	91, 750
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	2 cut(s)	328, 458
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	3 cut(s)	37, 85, 722
CviQI	GTAC	2 cut(s)	328, 458
DdeI	CTNAG	4 cut(s)	147, 171, 510, 701
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	5 cut(s)	19, 30, 142, 355, 468
DpnII	GATC	5 cut(s)	17, 28, 140, 353, 466
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	1 cut(s)	668
FaeI	CATG	3 cut(s)	40, 88, 725
FaqI	GGGAC	2 cut(s)	618, 656
FatI	CATG	3 cut(s)	36, 84, 721
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	2 cut(s)	191, 642
Fsp4HI	GCNGC	1 cut(s)	533
FspAI	RTGCGCAY	1 cut(s)	749
FspBI	CTAG	2 cut(s)	93, 737
FspI	TGCGCA	1 cut(s)	749
GlaI	GCGC	2 cut(s)	90, 749
GluI	GCNGC	1 cut(s)	533
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	304, 569
HapII	CCGG	2 cut(s)	285, 635
HhaI	GCGC	2 cut(s)	91, 750
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	40, 88, 725
Hin6I	GCGC	2 cut(s)	89, 748
HinP1I	GCGC	2 cut(s)	89, 748
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	6 cut(s)	268, 344, 380, 579, 647, 705
HpaII	CCGG	2 cut(s)	285, 635
HphI	GGTGA	2 cut(s)	214, 740
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	17, 61, 369, 652, 695, 704
Hpy188III	TCNNGA	6 cut(s)	26, 341, 404, 428, 635, 737
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	5 cut(s)	157, 218, 373, 561, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 731
HpyF3I	CTNAG	4 cut(s)	147, 171, 510, 701
HpySE526I	ACGT	1 cut(s)	661
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	40, 88, 725
HspAI	GCGC	2 cut(s)	89, 748
KasI	GGCGCC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	17, 28, 140, 353, 466
LmnI	GCTCC	4 cut(s)	221, 519, 634, 652
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	3 cut(s)	169, 360, 664
MaeI	CTAG	2 cut(s)	93, 737
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	5 cut(s)	19, 30, 142, 355, 468
MboI	GATC	5 cut(s)	17, 28, 140, 353, 466
MboII	GAAGA	7 cut(s)	14, 16, 61, 64, 177, 292, 392
MflI	RGATCY	2 cut(s)	17, 353
MluCI	AATT	6 cut(s)	225, 331, 396, 538, 638, 716
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	277, 588
MmeI	TCCRAC	3 cut(s)	156, 331, 400
MnlI	CCTC	8 cut(s)	109, 117, 193, 416, 522, 559, 607, 642
MroI	TCCGGA	1 cut(s)	634
MseI	TTAA	3 cut(s)	45, 294, 760
MslI	CAYNNNNRTG	1 cut(s)	726
MspI	CCGG	2 cut(s)	285, 635
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	626, 731
NarI	GGCGCC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	5 cut(s)	17, 28, 140, 353, 466
NlaIII	CATG	3 cut(s)	40, 88, 725
NlaIV	GGNNCC	2 cut(s)	90, 606
NmuCI	GTSAC	1 cut(s)	391
NsbI	TGCGCA	1 cut(s)	749
NspI	RCATGY	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	725
PfeI	GAWTC	4 cut(s)	344, 380, 647, 705
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	2 cut(s)	276, 587
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	2 cut(s)	276, 587
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	90, 606
PspPI	GGNCC	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	17, 353
RsaI	GTAC	2 cut(s)	329, 459
RsaNI	GTAC	2 cut(s)	328, 458
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	3 cut(s)	45, 294, 760
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	5 cut(s)	17, 28, 140, 353, 466
Sau96I	GGNCC	1 cut(s)	605
SchI	GAGTC	2 cut(s)	277, 588
ScrFI	CCNGG	1 cut(s)	477
SfaNI	GCATC	3 cut(s)	169, 360, 664
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	726
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	6 cut(s)	225, 331, 396, 538, 638, 716
SsiI	CCGC	1 cut(s)	360
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	2 cut(s)	93, 737
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	2 cut(s)	383, 577
TasI	AATT	6 cut(s)	225, 331, 396, 538, 638, 716
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	4 cut(s)	344, 380, 647, 705
Tru1I	TTAA	3 cut(s)	45, 294, 760
Tru9I	TTAA	3 cut(s)	45, 294, 760
TscAI	CASTG	2 cut(s)	82, 627
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	17, 426
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	82, 627
VpaK11BI	GGWCC	1 cut(s)	605
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	638
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	1 cut(s)	725
XspI	CTAG	2 cut(s)	93, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.