Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

18372781 .. 18375238

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1226200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGGAGCCGGTGATGAGGATTGCAAGACAATCCCAGCCATTAATCTGCAAAATTTTCCAGATGAAGAAGAGTACAGGAAACTGAGGGAAGCTTCAGAGACATGGGGATGCTTCAGGCTTGTGAACCACAGGATCCCAGTGGCTTTGATGTCAGAGATGAAGTGTGTGGTCAAATCTATGCTGGAGCTGCCCTTAGAGATGAAGAAGCAGAACAAAGATTCACTAGCTTTCACTGGCTACATACCTCCCAGCAAACTCAATCCTCTCTTTGAGGCTTTTGGTATTTACGACTTGGCCTCACCTCAGGCTGTTCATGGCTTTTGCTCTCAGTTGGATGTCACTTCCCACCAGAGAGAGGTGATAGAGAAGTATGCTCAAGCAACATGTGAGCTGGTTGTGGACATTGGGAAGAAGTTGGCAGAAAGTCTAGGGGTGGCCAACACTGATTTCCACAAGGGATGGCCTTGCCAATTCAGGATGAACAAGTACAACTTCTCTCCTGCATCAATGGGTTCCCCTGGTCTACAAGAACACACAGATTCTGGATTTCTAACAATTCTTCAAGAGGATGAAGATGTTGGTGGTCTGGAAGTAATGAACAAATTTGGTGCCTTTGTGCCTGTTCATCCTTGCCCTGGCACTCTCTTTATCAATCTTGGGGACTTCGCTCAGGTTTGGAGCAATGGGAGGTTGCACAATGTGAGGCATAGAGTAAAATGCTCGGCGGCTAGTATTCGAGTTTCGATCGCTACATTTCTCAGCGGACCAAAAGAGGAAGCGATAGAAGCTCCGCCGGAACTGGTAGATTCGGACCACCCTCGTCTCTACGTCCCTTTTGTTTATGACGATTATAGAGTTAGCAAGTTCAAACTGCTCGAAAAATTACAGGCTGATAAAGCCCTTGCACTCCTACGCATCCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

309

Amino Acids

34.45

Weight (kDa)

5.76

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	11 - 83	1.4e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	156 - 253	7.8e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	3 cut(s)	725, 762, 791
AclWI	GGATC	2 cut(s)	127, 140
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	52, 602
AcuI	CTGAAG	2 cut(s)	78, 97
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	2 cut(s)	74, 488
AfiI	CCNNNNNNNGG	2 cut(s)	355, 635
AflIII	ACRYGT	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	563, 868
AjnI	CCWGG	2 cut(s)	517, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	5 cut(s)	92, 187, 227, 391, 788
AluI	AGCT	5 cut(s)	92, 187, 227, 391, 788
Alw26I	GTCTC	2 cut(s)	92, 827
AlwI	GGATC	2 cut(s)	127, 140
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	3 cut(s)	294, 435, 461
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	52, 602
AseI	ATTAAT	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	764, 811
AsuHPI	GGTGA	3 cut(s)	23, 291, 370
AvaII	GGWCC	2 cut(s)	764, 811
AxyI	CCTNAGG	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	453
BciT130I	CCWGG	2 cut(s)	519, 636
BcoDI	GTCTC	2 cut(s)	92, 827
BfaI	CTAG	3 cut(s)	224, 428, 729
BisI	GCNGC	2 cut(s)	188, 726
BlsI	GCNGC	2 cut(s)	189, 727
Bme1390I	CCNGG	2 cut(s)	519, 636
Bme18I	GGWCC	2 cut(s)	764, 811
BmgT120I	GGNCC	2 cut(s)	764, 811
BmiI	GGNNCC	4 cut(s)	7, 134, 514, 610
BmrFI	CCNGG	2 cut(s)	519, 636
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	98, 512
BmuI	ACTGGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	517, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 635
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	137, 238, 804
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	2 cut(s)	519, 636
BseDI	CCNNGG	2 cut(s)	517, 634
BseGI	GGATG	7 cut(s)	113, 340, 464, 483, 574, 625, 915
BseLI	CCNNNNNNNGG	2 cut(s)	355, 635
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	5 cut(s)	74, 317, 341, 683, 772
BseNI	ACTGG	3 cut(s)	137, 238, 804
BseXI	GCAGC	1 cut(s)	174
BseYI	CCCAGC	2 cut(s)	34, 248
Bsh1285I	CGRYCG	1 cut(s)	747
BshFI	GGCC	3 cut(s)	296, 437, 463
BshNI	GGYRCC	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	747
BsiSI	CCGG	2 cut(s)	9, 794
BslFI	GGGAC	2 cut(s)	674, 815
BslI	CCNNNNNNNGG	2 cut(s)	355, 635
BsmAI	GTCTC	2 cut(s)	92, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	2 cut(s)	674, 815
BsnI	GGCC	3 cut(s)	296, 437, 463
Bsp143I	GATC	2 cut(s)	132, 744
BspACI	CCGC	3 cut(s)	725, 762, 791
BspANI	GGCC	3 cut(s)	296, 437, 463
BspCNI	CTCAG	5 cut(s)	75, 316, 340, 682, 771
BspLI	GGNNCC	4 cut(s)	7, 134, 514, 610
BspPI	GGATC	2 cut(s)	127, 140
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	137, 238, 804
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	517, 634
BssMI	GATC	2 cut(s)	132, 744
Bst2UI	CCWGG	2 cut(s)	519, 636
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	6 cut(s)	83, 193, 303, 327, 669, 758
BstF5I	GGATG	7 cut(s)	113, 340, 464, 483, 574, 625, 915
BstKTI	GATC	2 cut(s)	135, 747
BstMAI	GTCTC	2 cut(s)	92, 827
BstMBI	GATC	2 cut(s)	132, 744
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 785, 896
BstNI	CCWGG	2 cut(s)	519, 636
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	517, 634
BstV1I	GCAGC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	296, 437, 463
BtsCI	GGATG	7 cut(s)	113, 340, 464, 483, 574, 625, 915
BtsIMutI	CAGTG	3 cut(s)	144, 231, 441
CaiI	CAGNNNCTG	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	764, 811
Csp6I	GTAC	2 cut(s)	73, 487
CviAII	CATG	3 cut(s)	102, 314, 384
CviQI	GTAC	2 cut(s)	73, 487
DdeI	CTNAG	6 cut(s)	83, 193, 303, 327, 669, 758
DpnI	GATC	2 cut(s)	134, 746
DpnII	GATC	2 cut(s)	132, 744
DraIII	CACNNNGTG	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	764, 811
Eco57I	CTGAAG	2 cut(s)	78, 97
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	517, 634
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	3 cut(s)	105, 317, 387
FaiI	YATR	9 cut(s)	103, 179, 242, 315, 372, 385, 708, 843, 852
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	2 cut(s)	674, 815
FatI	CATG	3 cut(s)	101, 313, 383
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	188, 726
FokI	GGATG	7 cut(s)	120, 347, 471, 490, 581, 612, 902
Fsp4HI	GCNGC	2 cut(s)	188, 726
FspBI	CTAG	3 cut(s)	224, 428, 729
GluI	GCNGC	2 cut(s)	188, 726
GsaI	CCCAGC	2 cut(s)	38, 252
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	296, 437, 463
HapII	CCGG	2 cut(s)	9, 794
Hin1II	CATG	3 cut(s)	105, 317, 387
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	218, 539, 806
HpaII	CCGG	2 cut(s)	9, 794
HphI	GGTGA	3 cut(s)	23, 291, 370
Hpy166II	GTNNAC	3 cut(s)	124, 400, 524
Hpy188I	TCNGA	3 cut(s)	97, 154, 811
Hpy188III	TCNNGA	5 cut(s)	59, 475, 543, 563, 587
Hpy8I	GTNNAC	3 cut(s)	124, 400, 524
HpyCH4IV	ACGT	1 cut(s)	828
HpyCH4V	TGCA	5 cut(s)	24, 49, 503, 694, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 785, 896
HpyF3I	CTNAG	6 cut(s)	83, 193, 303, 327, 669, 758
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	3 cut(s)	105, 317, 387
Kzo9I	GATC	2 cut(s)	132, 744
LmnI	GCTCC	4 cut(s)	5, 184, 678, 793
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	2 cut(s)	98, 512
MaeI	CTAG	3 cut(s)	224, 428, 729
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	134, 746
MboI	GATC	2 cut(s)	132, 744
MboII	GAAGA	6 cut(s)	77, 80, 214, 421, 551, 584
MflI	RGATCY	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	5 cut(s)	52, 470, 555, 602, 881
MluNI	TGGCCA	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	312
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	762
MspI	CCGG	2 cut(s)	9, 794
MspR9I	CCNGG	2 cut(s)	519, 636
MvaI	CCWGG	2 cut(s)	519, 636
MwoI	GCNNNNNNNGC	3 cut(s)	187, 785, 896
NdeII	GATC	2 cut(s)	132, 744
NlaIII	CATG	3 cut(s)	105, 317, 387
NlaIV	GGNNCC	4 cut(s)	7, 134, 514, 610
NmeAIII	GCCGAG	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	337
NspI	RCATGY	1 cut(s)	387
PciI	ACATGT	1 cut(s)	383
PfeI	GAWTC	3 cut(s)	218, 539, 806
PkrI	GCNGC	2 cut(s)	189, 727
Ple19I	CGATCG	1 cut(s)	747
PscI	ACATGT	1 cut(s)	383
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	517, 634
PspFI	CCCAGC	2 cut(s)	34, 248
PspGI	CCWGG	2 cut(s)	517, 634
PspN4I	GGNNCC	4 cut(s)	7, 134, 514, 610
PspPI	GGNCC	2 cut(s)	764, 811
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	1 cut(s)	132
PvuI	CGATCG	1 cut(s)	747
RsaI	GTAC	2 cut(s)	74, 488
RsaNI	GTAC	2 cut(s)	73, 487
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	188, 726
Sau3AI	GATC	2 cut(s)	132, 744
Sau96I	GGNCC	2 cut(s)	764, 811
ScrFI	CCNGG	2 cut(s)	519, 636
SfaNI	GCATC	2 cut(s)	98, 512
SinI	GGWCC	2 cut(s)	764, 811
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	52, 470, 555, 602, 881
SsiI	CCGC	3 cut(s)	725, 762, 791
SspMI	CTAG	3 cut(s)	224, 428, 729
StyD4I	CCNGG	2 cut(s)	517, 634
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	3 cut(s)	736, 743, 876
TasI	AATT	5 cut(s)	52, 470, 555, 602, 881
TatI	WGTACW	2 cut(s)	72, 486
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	218, 539, 806
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	144, 238, 448
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	8 cut(s)	78, 173, 215, 302, 494, 585, 611, 614
TspRI	CASTG	3 cut(s)	144, 238, 448
VpaK11BI	GGWCC	2 cut(s)	764, 811
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	2 cut(s)	52, 602
XceI	RCATGY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	3 cut(s)	224, 428, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.