Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

17539861 .. 17540365

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGTTGTTTATGCTAGTCAACCACAAGATCCCAATGACTCTAATGTCAGAGATGAAGATAGCAGTCAGATCTCTTCTTGATCAGCCAATGGAGATCAAGACGTTTTACACAGATAATGTCATAGCTGGTAGCGGCTACTTGGCGCCCAACAAGAAGAACCCTCACTTGGAGACATTAGGTCTCTATTATGACTTTGGCTCATCTCAGGCTGTGGAAACCATTTACTCTCAATTGGGTGCTTCTCCCTACCAAAGCCTCTGCTATTCAACAGCTGAATTGATAGACTCTATTGTTAATAAGTTTGCTGAATTTGATATTTTAATGTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

112

Amino Acids

12.5

Weight (kDa)

4.85

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	270, 332
AhdI	GACNNNNNGTC	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	2 cut(s)	128, 275
AluI	AGCT	2 cut(s)	128, 275
Alw26I	GTCTC	2 cut(s)	167, 188
AlwI	GGATC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	167, 188
BfaI	CTAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	167, 188
Bso31I	GGTCTC	1 cut(s)	188
Bsp143I	GATC	4 cut(s)	30, 71, 82, 96
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	188
BssMI	GATC	4 cut(s)	30, 71, 82, 96
BssNI	GRCGYC	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	33, 74, 85, 99
BstMAI	GTCTC	2 cut(s)	167, 188
BstMBI	GATC	4 cut(s)	30, 71, 82, 96
BstX2I	RGATCY	2 cut(s)	30, 71
BstYI	RGATCY	2 cut(s)	30, 71
CfoI	GCGC	1 cut(s)	148
CviJI	RGCY	7 cut(s)	88, 128, 138, 201, 212, 258, 275
CviKI_1	RGCY	7 cut(s)	88, 128, 138, 201, 212, 258, 275
DdeI	CTNAG	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	4 cut(s)	32, 73, 84, 98
DpnII	GATC	4 cut(s)	30, 71, 82, 96
DrdI	GACNNNNNNGTC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	81
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
FaiI	YATR	3 cut(s)	14, 125, 192
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	149
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	40, 287
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	52, 71
Hpy188III	TCNNGA	2 cut(s)	80, 100
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	1 cut(s)	146
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	30, 71, 82, 96
LpnPI	CCDG	2 cut(s)	114, 194
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	104
MalI	GATC	4 cut(s)	32, 73, 84, 98
MboI	GATC	4 cut(s)	30, 71, 82, 96
MboII	GAAGA	3 cut(s)	68, 70, 169
MfeI	CAATTG	1 cut(s)	233
MflI	RGATCY	2 cut(s)	30, 71
MluCI	AATT	3 cut(s)	233, 278, 311
Mly113I	GGCGCC	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	34, 281
MnlI	CCTC	2 cut(s)	174, 269
MseI	TTAA	2 cut(s)	297, 323
MspA1I	CMGCKG	1 cut(s)	275
MunI	CAATTG	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	146
NdeII	GATC	4 cut(s)	30, 71, 82, 96
NlaIV	GGNNCC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	34, 281
PluTI	GGCGCC	1 cut(s)	149
PpsI	GAGTC	2 cut(s)	34, 281
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	30, 71
PvuII	CAGCTG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	297, 323
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	4 cut(s)	30, 71, 82, 96
SchI	GAGTC	2 cut(s)	34, 281
SetI	ASST	4 cut(s)	107, 130, 184, 277
SfoI	GGCGCC	1 cut(s)	147
SgeI	CNNG	9 cut(s)	29, 40, 92, 112, 141, 154, 166, 181, 221
Sse9I	AATT	3 cut(s)	233, 278, 311
SsiI	CCGC	1 cut(s)	135
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	17
TaiI	ACGT	1 cut(s)	107
TasI	AATT	3 cut(s)	233, 278, 311
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	297, 323
Tru9I	TTAA	2 cut(s)	297, 323
TspDTI	ATGAA	1 cut(s)	71
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.