Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

18370397 .. 18372156

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCAGAGATGAAGATGGTGGTCAGGTCTCTTCTTGATCGTCCCGTGGAAATCAAGAAGAACAACACTGATGTCATAGCTGCCAGCGGCTACTTGGCACCCAGCAAGGTCAACCCTCTCTATGAGACTTTGGGTCTCTATGACTTCGGCTCATCTCAGGCAGTGCAGACCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCAGAGAGAGGTAATAGAGAAGTATGCAGGAGCAATATATGAGCTGATAGTAGATATAGGGCAGAAGTTGGCGGAGAGTCTTGGGTTGGAGGGTGATTCTCTGAAGGAATGGACTTGCATGTTTAGGATTAACAAGTACAACTTCACTCCTGAATCCTTTGGAACTTCCGGAGTTCAGTTACACACAGATTCGGGATTTCTGACCATTCTTCAAGCCGATGAAAATGTTGGGGGTATAGAAGTGATGGACAAGTCTGGTGCTTTTGTACCAGTTGATCCTTGTCCAGGCAGTCTCCTTGTCAATCTTGGAGATATTGCTAAGGTGTGGAGCGATGGGATGCTGTGCAATGTAAAGCATAGAGTGCAATGCTTGGAAGCCACCATTCGGGTCTCTATTGCTTCGTTTTTGTTGGGACCGAAGGACGAGGTAGTAGAAGCCCATCCGAAATTTGTTGATGCGGAACACCTACGTTTGTATACCCCCTTCACATTTGCAGATTACAGAAAGCTCAGAGTCACCACAGATTTGCTAGATGGGGAAGCGCTTGAACTGTTGCGCATGAAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

257

Amino Acids

28.36

Weight (kDa)

4.94

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	105 - 203	5e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	97
AccI	GTMKAC	1 cut(s)	677
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	3 cut(s)	87, 272, 659
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	338, 468
AfeI	AGCGCT	1 cut(s)	744
AfiI	CCNNNNNNNGG	3 cut(s)	208, 485, 585
AgsI	TTSAA	2 cut(s)	413, 749
AhdI	GACNNNNNGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	3 cut(s)	80, 244, 709
AluI	AGCT	3 cut(s)	80, 244, 709
Alw26I	GTCTC	5 cut(s)	33, 119, 140, 497, 595
AlwI	GGATC	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	368
Aor51HI	AGCGCT	1 cut(s)	744
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	745, 759
AspS9I	GGNCC	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	305, 709
AvaII	GGWCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	668, 700
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	5 cut(s)	10, 439, 527, 648, 728
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	5 cut(s)	33, 119, 140, 497, 595
BfaI	CTAG	2 cut(s)	731, 769
BfoI	RGCGCY	1 cut(s)	746
BisI	GCNGC	2 cut(s)	81, 88
BlsI	GCNGC	2 cut(s)	82, 89
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	614
BmeRI	GACNNNNNGTC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	99, 615
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	178, 528, 646
Bpu10I	CCTNAGC	1 cut(s)	519
BsaI	GGTCTC	3 cut(s)	33, 140, 595
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 485, 585
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	2 cut(s)	553, 572
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	3 cut(s)	193, 543, 640
BseLI	CCNNNNNNNGG	3 cut(s)	208, 485, 585
BseMI	GCAATG	2 cut(s)	553, 572
BseMII	CTCAG	3 cut(s)	170, 194, 724
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	27, 627
BslI	CCNNNNNNNGG	3 cut(s)	208, 485, 585
BsmAI	GTCTC	5 cut(s)	33, 119, 140, 497, 595
BsmFI	GGGAC	2 cut(s)	27, 627
Bso31I	GGTCTC	3 cut(s)	33, 140, 595
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	37, 475
BspACI	CCGC	3 cut(s)	87, 272, 659
BspCNI	CTCAG	3 cut(s)	169, 193, 723
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	99, 615
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	3 cut(s)	33, 140, 595
BsrDI	GCAATG	2 cut(s)	553, 572
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	2 cut(s)	37, 475
BssNAI	GTATAC	1 cut(s)	678
Bst1107I	GTATAC	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	753
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	4 cut(s)	156, 180, 519, 710
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	193, 543, 640
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	2 cut(s)	745, 759
BstKTI	GATC	2 cut(s)	40, 478
BstMAI	GTCTC	5 cut(s)	33, 119, 140, 497, 595
BstMBI	GATC	2 cut(s)	37, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	193, 543, 640
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	66, 168
Cac8I	GCNNGC	1 cut(s)	85
CfoI	GCGC	2 cut(s)	745, 759
Cfr13I	GGNCC	1 cut(s)	614
Csp6I	GTAC	2 cut(s)	337, 467
CviAII	CATG	2 cut(s)	319, 760
CviJI	RGCY	8 cut(s)	80, 90, 150, 244, 416, 578, 638, 709
CviKI_1	RGCY	8 cut(s)	80, 90, 150, 244, 416, 578, 638, 709
CviQI	GTAC	2 cut(s)	337, 467
DdeI	CTNAG	4 cut(s)	156, 180, 519, 710
DpnI	GATC	2 cut(s)	39, 477
DpnII	GATC	2 cut(s)	37, 475
DriI	GACNNNNNGTC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	287
Eco31I	GGTCTC	3 cut(s)	33, 140, 595
Eco47I	GGWCC	1 cut(s)	614
Eco47III	AGCGCT	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	322, 763
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	2 cut(s)	27, 627
FatI	CATG	2 cut(s)	318, 759
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	2 cut(s)	81, 88
FokI	GGATG	3 cut(s)	200, 550, 627
Fsp4HI	GCNGC	2 cut(s)	81, 88
FspBI	CTAG	2 cut(s)	731, 769
FspI	TGCGCA	1 cut(s)	758
GlaI	GCGC	2 cut(s)	744, 758
GluI	GCNGC	2 cut(s)	81, 88
GsaI	CCCAGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	746
HapII	CCGG	1 cut(s)	369
HhaI	GCGC	2 cut(s)	745, 759
Hin1II	CATG	2 cut(s)	322, 763
Hin6I	GCGC	2 cut(s)	743, 757
HinP1I	GCGC	2 cut(s)	743, 757
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	5 cut(s)	277, 296, 353, 389, 714
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	2 cut(s)	305, 709
Hpy166II	GTNNAC	2 cut(s)	112, 678
Hpy188I	TCNGA	5 cut(s)	7, 303, 402, 645, 713
Hpy188III	TCNNGA	5 cut(s)	35, 55, 350, 369, 393
Hpy8I	GTNNAC	2 cut(s)	112, 678
HpyAV	CCTTC	3 cut(s)	298, 613, 694
HpyCH4III	ACNGT	1 cut(s)	753
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	6 cut(s)	166, 227, 318, 546, 565, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	4 cut(s)	156, 180, 519, 710
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	2 cut(s)	322, 763
HspAI	GCGC	2 cut(s)	743, 757
Kpn2I	TCCGGA	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	37, 475
LmnI	GCTCC	2 cut(s)	230, 528
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	3 cut(s)	178, 528, 646
MaeI	CTAG	2 cut(s)	731, 769
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	2 cut(s)	378, 715
MalI	GATC	2 cut(s)	39, 477
MboI	GATC	2 cut(s)	37, 475
MboII	GAAGA	5 cut(s)	23, 25, 70, 186, 401
MluCI	AATT	1 cut(s)	647
MlyI	GAGTC	2 cut(s)	286, 723
MmeI	TCCRAC	2 cut(s)	165, 267
MnlI	CCTC	4 cut(s)	126, 202, 283, 619
MroI	TCCGGA	1 cut(s)	368
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	2 cut(s)	37, 475
NlaIII	CATG	2 cut(s)	322, 763
NlaIV	GGNNCC	2 cut(s)	99, 615
NmuCI	GTSAC	1 cut(s)	715
NsbI	TGCGCA	1 cut(s)	758
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	3 cut(s)	296, 353, 389
PkrI	GCNGC	2 cut(s)	82, 89
PleI	GAGTC	2 cut(s)	285, 722
PpsI	GAGTC	2 cut(s)	285, 722
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	99, 615
PspPI	GGNCC	1 cut(s)	614
RsaI	GTAC	2 cut(s)	338, 468
RsaNI	GTAC	2 cut(s)	337, 467
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	81, 88
Sau3AI	GATC	2 cut(s)	37, 475
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	2 cut(s)	286, 723
ScrFI	CCNGG	1 cut(s)	486
SfaNI	GCATC	3 cut(s)	178, 528, 646
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	1 cut(s)	647
SsiI	CCGC	3 cut(s)	87, 272, 659
SspMI	CTAG	2 cut(s)	731, 769
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	753
TaiI	ACGT	1 cut(s)	673
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	1 cut(s)	647
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	296, 353, 389
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	73, 168
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	2 cut(s)	26, 435
TspRI	CASTG	2 cut(s)	73, 168
VpaK11BI	GGWCC	1 cut(s)	614
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	2 cut(s)	731, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.