Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

1742385 .. 1743553

Gene Structure 1169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010454

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTAAATCCAATTCCAGTGATTGATCTGAGTCAGTTTCCTGCTTCTGGTGAGTACGATAAGCTTAGGTTAGCATCAGAGGAATGGGGTTGCTTCCGGCTCCTCAACCACAAGATCCCATTGCCTCTGATGGCAGAGATGAAGATAGTGGTAAGATCTCTCCTTGATCTGCCCATGGAGATCAAGAAGAACAACACTGATGTCATAGCTGGCAGTGGCTACATGGCACCGAGCAAGGTCAACCCGCTCTATGAGGCTTTAGGTCTCTATGACTTGGGATCATCTCAGGCTGTGCAGACCTTTTGCTCTCAGTTGCATGCTTCTTCCTACCAGAGAGAGGTGATCGAGAAGTATGCAGGAGCAGTTTATGAGCAGATGGTGGATATAGGGCATAAGTTGGCAGAGTGTCTCGGATTGTGGAGTGGTTTTCTGAAGGGATGGGCTTGCCAGTTTAGGATCAACAAGTACAACTTCACTCCTGAATCCGTTGGATCTTCCGGAGTTCAGATACACACAGATGCGGGATTTGTGACAATTCTTCAAGATGATGAAAATGTTGGAGGTCTTGAAGTAATGGACAAATCTGGTGCTTTTGTACCAGTTGATCCTTATCCAGGCACTCTCATTGTCAATCTAGGAGACACGGCTAAGGCATGGAGCAACGGGAGGCTGTGCAACGTCAAGCATAGAGTTCAATGCAGGGAAGCCACCATTCGAGTCTCCATTGCTTCATTTCTGTTGGGACCGAAGGAGGAAGCAGTGGAAGCCCCACCAGAATTTGTTGATTCGGATCACCCCCGTCTGTATGTCCCTGTCACTCATGAAGAGTACAGGAAGCTCAGACTTTCCAAAAGCTTGCATGCCGGTGAAGCCCTTGAACTTCTGCGCATCAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

300

Amino Acids

33.15

Weight (kDa)

5.79

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	5 - 76	7.6e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	149 - 246	1.7e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	887
AccB1I	GGYRCC	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	497
AciI	CCGC	2 cut(s)	245, 521
AclWI	GGATC	6 cut(s)	109, 286, 464, 499, 599, 798
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	4 cut(s)	56, 467, 597, 830
AfiI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
AgsI	TTSAA	4 cut(s)	542, 569, 695, 878
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	4 cut(s)	64, 209, 838, 855
AluI	AGCT	4 cut(s)	64, 209, 838, 855
Alw26I	GTCTC	4 cut(s)	269, 413, 633, 724
AlwI	GGATC	6 cut(s)	109, 286, 464, 499, 599, 798
Aor13HI	TCCGGA	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	4 cut(s)	62, 352, 785, 878
AvaII	GGWCC	1 cut(s)	743
BanI	GGYRCC	1 cut(s)	226
BccI	CCATC	3 cut(s)	124, 370, 432
BceAI	ACGGC	1 cut(s)	660
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	4 cut(s)	269, 413, 633, 724
BfaI	CTAG	1 cut(s)	635
BglII	AGATCT	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	3 cut(s)	101, 228, 744
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	83, 508
Bpu10I	CCTNAGC	2 cut(s)	65, 648
BsaBI	GATNNNNATC	2 cut(s)	609, 789
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 337, 614
Bse118I	RCCGGY	1 cut(s)	863
Bse1I	ACTGG	3 cut(s)	17, 448, 599
Bse3DI	GCAATG	2 cut(s)	119, 723
Bse8I	GATNNNNATC	2 cut(s)	609, 789
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	443
BseJI	GATNNNNATC	2 cut(s)	609, 789
BseLI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
BseMI	GCAATG	2 cut(s)	119, 723
BseMII	CTCAG	4 cut(s)	20, 299, 323, 853
BseNI	ACTGG	3 cut(s)	17, 448, 599
BseRI	GAGGAG	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	97, 498, 864
BslFI	GGGAC	2 cut(s)	756, 794
BslI	CCNNNNNNNGG	3 cut(s)	47, 337, 614
BsmAI	GTCTC	4 cut(s)	269, 413, 633, 724
BsmFI	GGGAC	2 cut(s)	756, 794
Bso31I	GGTCTC	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	245, 521
BspCNI	CTCAG	4 cut(s)	21, 298, 322, 852
BspEI	TCCGGA	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	3 cut(s)	101, 228, 744
BspPI	GGATC	6 cut(s)	109, 286, 464, 499, 599, 798
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	247
BsrDI	GCAATG	2 cut(s)	119, 723
BsrFI	RCCGGY	1 cut(s)	863
BsrI	ACTGG	3 cut(s)	17, 448, 599
BssAI	RCCGGY	1 cut(s)	863
BssECI	CCNNGG	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	615
Bst6I	CTCTTC	1 cut(s)	819
BstC8I	GCNNGC	5 cut(s)	211, 318, 445, 857, 861
BstDEI	CTNAG	6 cut(s)	29, 65, 285, 309, 648, 839
BstDSI	CCRYGG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	888
BstMAI	GTCTC	4 cut(s)	269, 413, 633, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 869
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	2 cut(s)	320, 863
BstSCI	CCNGG	1 cut(s)	613
BstX2I	RGATCY	3 cut(s)	114, 155, 491
BstYI	RGATCY	3 cut(s)	114, 155, 491
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	443
BtsI	GCAGTG	2 cut(s)	220, 765
BtsIMutI	CAGTG	4 cut(s)	24, 195, 220, 765
Cac8I	GCNNGC	5 cut(s)	211, 318, 445, 857, 861
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	1 cut(s)	888
Cfr10I	RCCGGY	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	4 cut(s)	55, 466, 596, 829
CviAII	CATG	6 cut(s)	175, 223, 317, 654, 821, 860
CviQI	GTAC	4 cut(s)	55, 466, 596, 829
DdeI	CTNAG	6 cut(s)	29, 65, 285, 309, 648, 839
Eam1104I	CTCTTC	1 cut(s)	819
EarI	CTCTTC	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	452
EcoNI	CCTNNNNNAGG	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	6 cut(s)	178, 226, 320, 657, 824, 863
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	2 cut(s)	756, 794
FatI	CATG	6 cut(s)	174, 222, 316, 653, 820, 859
FauI	CCCGC	2 cut(s)	252, 514
FokI	GGATG	1 cut(s)	450
FspBI	CTAG	1 cut(s)	635
FspI	TGCGCA	1 cut(s)	887
GlaI	GCGC	1 cut(s)	887
HapII	CCGG	3 cut(s)	97, 498, 864
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	6 cut(s)	178, 226, 320, 657, 824, 863
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	62, 853
HinfI	GANTC	4 cut(s)	31, 482, 717, 785
HpaII	CCGG	3 cut(s)	97, 498, 864
HphI	GGTGA	4 cut(s)	62, 352, 785, 878
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	8 cut(s)	30, 79, 129, 413, 432, 507, 790, 842
Hpy188III	TCNNGA	7 cut(s)	184, 346, 479, 498, 542, 566, 821
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	427, 742
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	6 cut(s)	295, 316, 356, 675, 699, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 869
HpyF3I	CTNAG	6 cut(s)	29, 65, 285, 309, 648, 839
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	6 cut(s)	178, 226, 320, 657, 824, 863
HspAI	GCGC	1 cut(s)	886
Kpn2I	TCCGGA	1 cut(s)	497
LmnI	GCTCC	3 cut(s)	105, 359, 657
LweI	GCATC	2 cut(s)	83, 508
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	2 cut(s)	529, 814
MbiI	CCGCTC	1 cut(s)	247
MboII	GAAGA	6 cut(s)	154, 199, 315, 486, 530, 836
MflI	RGATCY	3 cut(s)	114, 155, 491
MluCI	AATT	3 cut(s)	12, 534, 776
MlyI	GAGTC	2 cut(s)	40, 726
MmeI	TCCRAC	2 cut(s)	469, 538
MnlI	CCTC	8 cut(s)	73, 113, 135, 247, 331, 554, 660, 745
MroI	TCCGGA	1 cut(s)	497
MslI	CAYNNNNRTG	2 cut(s)	516, 864
MspI	CCGG	3 cut(s)	97, 498, 864
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	2 cut(s)	764, 869
NcoI	CCATGG	1 cut(s)	174
NlaIII	CATG	6 cut(s)	178, 226, 320, 657, 824, 863
NlaIV	GGNNCC	3 cut(s)	101, 228, 744
NmuCI	GTSAC	2 cut(s)	529, 814
NsbI	TGCGCA	1 cut(s)	887
NspI	RCATGY	2 cut(s)	320, 863
PaeI	GCATGC	2 cut(s)	320, 863
PagI	TCATGA	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	482, 785
PleI	GAGTC	2 cut(s)	39, 725
PpsI	GAGTC	2 cut(s)	39, 725
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	101, 228, 744
PspPI	GGNCC	1 cut(s)	743
PsuI	RGATCY	3 cut(s)	114, 155, 491
RsaI	GTAC	4 cut(s)	56, 467, 597, 830
RsaNI	GTAC	4 cut(s)	55, 466, 596, 829
RseI	CAYNNNNRTG	2 cut(s)	516, 864
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	40, 726
ScrFI	CCNGG	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	83, 508
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	516, 864
SphI	GCATGC	2 cut(s)	320, 863
Sse9I	AATT	3 cut(s)	12, 534, 776
SsiI	CCGC	2 cut(s)	245, 521
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	2 cut(s)	345, 715
TaqII	GACCGA	1 cut(s)	760
TasI	AATT	3 cut(s)	12, 534, 776
TatI	WGTACW	2 cut(s)	465, 828
TfiI	GAWTC	2 cut(s)	482, 785
TscAI	CASTG	4 cut(s)	24, 202, 220, 765
TseFI	GTSAC	2 cut(s)	529, 814
Tsp45I	GTSAC	2 cut(s)	529, 814
TspDTI	ATGAA	4 cut(s)	155, 564, 720, 837
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	4 cut(s)	24, 202, 220, 765
VpaK11BI	GGWCC	1 cut(s)	743
XagI	CCTNNNNNAGG	1 cut(s)	612
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	2 cut(s)	320, 863
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.