Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

5887663 .. 5889216

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGGATGCTTCAGGCTTGTGAACCACATGATCCCACCGGCTCTGATGTTGGAGATGAATTCAGTGGTCAGATCTTTGCTGGACCTGCCCATGGATCGATCAAGAAGCAGAACAAGGATGGGATATCTGGCAGTGGATACCGGGCTCCCACCATAGTCAACCCTATCTATGAATCTTTGGGGTTCTACGACTTGGGATCGCGTCAGGCTTTGGACAGCTTTTGCTCTCAGTTAAATGCTTCTTCCTACCAGAGAGAGGTGATGGAGAAGTATGCTCAAGCAGTGTGTGAGCAGACTCTGGATATAGGGCAGAAATTGGCAGAGAGTCTAGGGTTGGCAGATAATGATTATCTCAAGGGGTGGCCCTGCCAGTTCAGGATGAACAAGTACACCTTCACTCCTGAATCAGTTGGATCCAATGGTCTACGATTACACACGGACCCGGGATTTCTTACCATTCTTCAAGACGATGAAATTGTCGGTGGCTTGGAAGTGATGGACAAATCCGGCACCTTTGTAGCTGTTGATCCTTGCCCAGGCACTCTCCTTGTTAATCTCGGGGATGTCGCTCAGGCATGGAGCAATGGAAGGTTGTGCAATGTCAAGCACAGAGTACAATTCCAGGAGGCAAGAATTCGAGTTTCGATCGCTTCATTCCAACGTGGACCAGATGAGGAAGCAGGAGTGGAAGCTCCTCCAGAATTGGTGGATTCCGAGCACCCTCGACTTTACGTTCGCTTTACTTATGGAGATTACAGAAAGCTAAGATTATCCGCAAACCTGTATGCTGGTGAAGCCCTCGCACTCGTACGCACCTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

275

Amino Acids

30.0

Weight (kDa)

5.01

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	1 cut(s)	202
AciI	CCGC	1 cut(s)	774
AclWI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AcsI	RAATTY	2 cut(s)	59, 633
AfaI	GTAC	3 cut(s)	389, 615, 810
AfiI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	535, 621
AluBI	AGCT	4 cut(s)	219, 521, 692, 763
AluI	AGCT	4 cut(s)	219, 521, 692, 763
Alw21I	GWGCWC	1 cut(s)	720
AlwI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AlwNI	CAGNNNCTG	1 cut(s)	298
Ama87I	CYCGRG	2 cut(s)	442, 557
AoxI	GGCC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	59, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
AspS9I	GGNCC	4 cut(s)	83, 363, 439, 665
AsuC2I	CCSGG	3 cut(s)	143, 443, 444
AsuHPI	GGTGA	2 cut(s)	271, 803
AvaI	CYCGRG	2 cut(s)	442, 557
AvaII	GGWCC	3 cut(s)	83, 439, 665
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	720
BccI	CCATC	3 cut(s)	113, 256, 490
BciT130I	CCWGG	2 cut(s)	537, 623
BciVI	GTATCC	1 cut(s)	131
BcnI	CCSGG	3 cut(s)	143, 443, 444
BfaI	CTAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	72
Bme1390I	CCNGG	5 cut(s)	143, 443, 444, 537, 623
Bme18I	GGWCC	3 cut(s)	83, 439, 665
BmeT110I	CYCGRG	2 cut(s)	442, 557
BmgT120I	GGNCC	4 cut(s)	83, 363, 439, 665
BmiI	GGNNCC	4 cut(s)	147, 415, 441, 511
BmrFI	CCNGG	5 cut(s)	143, 443, 444, 537, 623
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	261, 338
BpuMI	CCSGG	3 cut(s)	143, 443, 444
Bsa29I	ATCGAT	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	91, 442, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 256, 536
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	589, 604
BseBI	CCWGG	2 cut(s)	537, 623
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	91, 442, 535
BseGI	GGATG	4 cut(s)	12, 124, 384, 568
BseLI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BseMI	GCAATG	2 cut(s)	589, 604
BseMII	CTCAG	2 cut(s)	242, 584
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	2 cut(s)	684, 808
Bsh1236I	CGCG	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	720
BsiHKCI	CYCGRG	2 cut(s)	442, 557
BsiSI	CCGG	4 cut(s)	39, 142, 443, 507
BsiWI	CGTACG	1 cut(s)	808
BslI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BsnI	GGCC	1 cut(s)	364
BsoBI	CYCGRG	2 cut(s)	442, 557
Bsp1286I	GDGCHC	2 cut(s)	148, 720
Bsp143I	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	241, 583
BspDI	ATCGAT	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	147, 415, 441, 511
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	589, 604
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	91, 442, 535
BssMI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	2 cut(s)	537, 623
BstDEI	CTNAG	3 cut(s)	228, 570, 764
BstDSI	CCRYGG	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	4 cut(s)	12, 124, 384, 568
BstFNI	CGCG	1 cut(s)	202
BstKTI	GATC	8 cut(s)	34, 75, 98, 102, 200, 416, 529, 648
BstMBI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 794
BstNI	CCWGG	2 cut(s)	537, 623
BstSCI	CCNGG	5 cut(s)	141, 441, 442, 535, 621
BstUI	CGCG	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	72, 413
BstYI	RGATCY	2 cut(s)	72, 413
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	364
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	4 cut(s)	12, 124, 384, 568
BtsI	GCAGTG	2 cut(s)	139, 288
BtsIMutI	CAGTG	3 cut(s)	70, 139, 288
BveI	ACCTGC	1 cut(s)	94
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	4 cut(s)	83, 363, 439, 665
Cfr9I	CCCGGG	1 cut(s)	442
ClaI	ATCGAT	1 cut(s)	98
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	388, 614, 809
CviAII	CATG	3 cut(s)	29, 92, 576
CviQI	GTAC	3 cut(s)	388, 614, 809
DdeI	CTNAG	3 cut(s)	228, 570, 764
DpnI	GATC	8 cut(s)	33, 74, 97, 101, 199, 415, 528, 647
DpnII	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	3 cut(s)	83, 439, 665
Eco88I	CYCGRG	2 cut(s)	442, 557
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRI	GAATTC	2 cut(s)	59, 633
EcoRII	CCWGG	2 cut(s)	535, 621
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	32, 95, 579
FaiI	YATR	9 cut(s)	30, 93, 155, 171, 273, 305, 577, 747, 786
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	3 cut(s)	28, 91, 575
FblI	GTMKAC	1 cut(s)	424
FokI	GGATG	4 cut(s)	19, 131, 391, 575
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	329
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	4 cut(s)	39, 142, 443, 507
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	32, 95, 579
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	5 cut(s)	173, 295, 325, 404, 710
HpaII	CCGG	4 cut(s)	39, 142, 443, 507
HphI	GGTGA	2 cut(s)	271, 803
Hpy166II	GTNNAC	5 cut(s)	23, 160, 390, 425, 665
Hpy188I	TCNGA	3 cut(s)	46, 72, 715
Hpy188III	TCNNGA	6 cut(s)	103, 299, 376, 401, 464, 698
Hpy8I	GTNNAC	5 cut(s)	23, 160, 390, 425, 665
HpyAV	CCTTC	2 cut(s)	403, 582
HpyCH4IV	ACGT	2 cut(s)	661, 732
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 794
HpyF3I	CTNAG	3 cut(s)	228, 570, 764
HpySE526I	ACGT	2 cut(s)	661, 732
Hsp92II	CATG	3 cut(s)	32, 95, 579
Kzo9I	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
LmnI	GCTCC	3 cut(s)	151, 579, 697
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	661, 732
MalI	GATC	8 cut(s)	33, 74, 97, 101, 199, 415, 528, 647
MboI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
MboII	GAAGA	2 cut(s)	234, 452
MflI	RGATCY	2 cut(s)	72, 413
MhlI	GDGCHC	2 cut(s)	148, 720
MluCI	AATT	6 cut(s)	59, 314, 474, 617, 633, 701
MlyI	GAGTC	2 cut(s)	289, 334
MmeI	TCCRAC	3 cut(s)	31, 391, 682
MnlI	CCTC	6 cut(s)	250, 619, 667, 705, 732, 809
MseI	TTAA	2 cut(s)	233, 552
MspI	CCGG	4 cut(s)	39, 142, 443, 507
MspR9I	CCNGG	5 cut(s)	143, 443, 444, 537, 623
MvaI	CCWGG	2 cut(s)	537, 623
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	86, 794
NciI	CCSGG	3 cut(s)	143, 443, 444
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
NlaIII	CATG	3 cut(s)	32, 95, 579
NlaIV	GGNNCC	4 cut(s)	147, 415, 441, 511
PfeI	GAWTC	3 cut(s)	173, 404, 710
Pfl23II	CGTACG	1 cut(s)	808
PfoI	TCCNGGA	1 cut(s)	621
Ple19I	CGATCG	1 cut(s)	648
PleI	GAGTC	2 cut(s)	289, 333
PpsI	GAGTC	2 cut(s)	289, 333
Psp6I	CCWGG	2 cut(s)	535, 621
PspGI	CCWGG	2 cut(s)	535, 621
PspLI	CGTACG	1 cut(s)	808
PspN4I	GGNNCC	4 cut(s)	147, 415, 441, 511
PspPI	GGNCC	4 cut(s)	83, 363, 439, 665
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	72, 413
PvuI	CGATCG	1 cut(s)	648
RsaI	GTAC	3 cut(s)	389, 615, 810
RsaNI	GTAC	3 cut(s)	388, 614, 809
SaqAI	TTAA	2 cut(s)	233, 552
Sau3AI	GATC	8 cut(s)	31, 72, 95, 99, 197, 413, 526, 645
Sau96I	GGNCC	4 cut(s)	83, 363, 439, 665
SchI	GAGTC	2 cut(s)	289, 334
ScrFI	CCNGG	5 cut(s)	143, 443, 444, 537, 623
SduI	GDGCHC	2 cut(s)	148, 720
SinI	GGWCC	3 cut(s)	83, 439, 665
SmaI	CCCGGG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	276, 353
SmoI	CTYRAG	2 cut(s)	276, 353
Sse9I	AATT	6 cut(s)	59, 314, 474, 617, 633, 701
SsiI	CCGC	1 cut(s)	774
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	5 cut(s)	141, 441, 442, 535, 621
StyI	CCWWGG	1 cut(s)	91
TaiI	ACGT	2 cut(s)	664, 735
TaqI	TCGA	4 cut(s)	98, 637, 644, 724
TasI	AATT	6 cut(s)	59, 314, 474, 617, 633, 701
TatI	WGTACW	2 cut(s)	387, 613
TfiI	GAWTC	3 cut(s)	173, 404, 710
Tru1I	TTAA	2 cut(s)	233, 552
Tru9I	TTAA	2 cut(s)	233, 552
TscAI	CASTG	3 cut(s)	70, 139, 288
TspDTI	ATGAA	5 cut(s)	72, 186, 395, 486, 642
TspGWI	ACGGA	1 cut(s)	452
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	3 cut(s)	70, 139, 288
VpaK11BI	GGWCC	3 cut(s)	83, 439, 665
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	59, 633
XmaI	CCCGGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.