Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

8653792 .. 8655869

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1107000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGAGAAGGAGAGGAAGATTGCAGGACAATCCCAGCCATTGATCTGAAAAAATTTCCAGATGCAGAAGAGTACAGGAAGCTGAGGGAAGCATCAGAGACATGGGGATGCTTCAGGCTTGTGAACCACATGATCCCACCGGCTCTGATGTCAGAGATGAAATCAGTGGTCAGATCTTTGCTGGACCTGCCCATGGAGATCAAGAAGCAGAACAAGGATGTGATAGCGGGCAGTGGGTACATGGCTCCCAGCAAAGTCAACCCTCTCTACGAAGCTTTGGGGCTCTACGACTTGGGATCGGGTCAGGCTGTCGACAGCTTTTGCTCTCAGTTGAATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTATGCGCAAGCAGTGTATGAGCAGATTGCGGACATAGGAAAAAGGTTGGCAGAGAGTTTAGGGTTGGCTGATAGTGATTATCTCAAAGGGTGGCCCTGCCAGTTCAGGATAAACAAGTACAACTTCACTCCTGAATCAGTTGGATCCTCTGGTGTACAATTACACACAGACTCAGGATTTCTAACCATTCTTCAAGACGATGAAGATGTCGGTGGTTTGGAAGTGATGGACAAATCCGGCGCCTTTGTAGCCGTTGATCCTTGCCCAGGCACTCTCCTTGTTAATCTCGGAGATGTTGCTAAGGCATGGAGCAATGGGAGGTTGTGCAATGTGAAGCATAGAGTACAATGCAGGGAGGCAACAATTCGAATTTCGATCGCTACATTCCTCTTGGGACCGAGGGAGAAAGAGGTAGTGGAAGCTCCACCGGAATTTGTGGATTCCGAGCACCCTCGACTTTACGTTCCTTTTAGTTACGAAGACTACAGAAAGCTCAGACTCTCCACAAAACTGCAAGCTGGTGAAGCCCTTGCACTCGTACGCACCCCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

308

Amino Acids

34.09

Weight (kDa)

5.15

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	11 - 82	9.1e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	156 - 253	5.6e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	375
Acc36I	ACCTGC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	227, 398
AclWI	GGATC	5 cut(s)	127, 304, 507, 520, 620
AcsI	RAATTY	3 cut(s)	53, 738, 800
AcuI	CTGAAG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	6 cut(s)	74, 239, 488, 525, 714, 909
AfiI	CCNNNNNNNGG	3 cut(s)	193, 355, 635
AgsI	TTSAA	2 cut(s)	334, 563
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	6 cut(s)	82, 275, 318, 791, 862, 887
AluI	AGCT	6 cut(s)	82, 275, 318, 791, 862, 887
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	5 cut(s)	127, 304, 507, 520, 620
AoxI	GGCC	1 cut(s)	461
ApoI	RAATTY	3 cut(s)	53, 738, 800
AspLEI	GCGC	2 cut(s)	376, 611
AspS9I	GGNCC	3 cut(s)	184, 462, 764
AsuHPI	GGTGA	2 cut(s)	370, 902
AsuII	TTCGAA	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	184, 764
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	819
BbvCI	CCTCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	853
BfoI	RGCGCY	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	2 cut(s)	184, 764
BmgT120I	GGNCC	3 cut(s)	184, 462, 764
BmiI	GGNNCC	4 cut(s)	246, 514, 610, 765
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	3 cut(s)	52, 98, 101
BpiI	GAAGAC	1 cut(s)	855
Bpu10I	CCTNAGC	2 cut(s)	83, 669
Bpu14I	TTCGAA	1 cut(s)	736
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	192, 634, 767
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 355, 635
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	2 cut(s)	688, 703
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	192, 634, 767
BseGI	GGATG	2 cut(s)	113, 223
BseLI	CCNNNNNNNGG	3 cut(s)	193, 355, 635
BseMI	GCAATG	2 cut(s)	688, 703
BseMII	CTCAG	4 cut(s)	74, 341, 555, 877
BseNI	ACTGG	1 cut(s)	469
BseYI	CCCAGC	2 cut(s)	34, 248
Bsh1285I	CGRYCG	1 cut(s)	747
BshFI	GGCC	1 cut(s)	463
BshNI	GGYRCC	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	747
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	3 cut(s)	140, 606, 797
BsiWI	CGTACG	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	3 cut(s)	193, 355, 635
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	2 cut(s)	285, 819
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	227, 398
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	4 cut(s)	75, 340, 554, 876
BspLI	GGNNCC	4 cut(s)	246, 514, 610, 765
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	5 cut(s)	127, 304, 507, 520, 620
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	688, 703
BsrFI	RCCGGY	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	192, 634, 767
BssMI	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	636
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	609
BstAUI	TGTACA	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	229, 378, 885
BstDEI	CTNAG	5 cut(s)	83, 327, 541, 669, 863
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	2 cut(s)	113, 223
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	2 cut(s)	376, 611
BstKTI	GATC	8 cut(s)	46, 135, 176, 201, 299, 515, 628, 747
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	853
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	2 cut(s)	173, 512
BstYI	RGATCY	2 cut(s)	173, 512
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	113, 223
BtsI	GCAGTG	2 cut(s)	238, 387
BtsIMutI	CAGTG	3 cut(s)	171, 238, 387
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	229, 378, 885
CfoI	GCGC	2 cut(s)	376, 611
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	3 cut(s)	184, 462, 764
Csp6I	GTAC	6 cut(s)	73, 238, 487, 524, 713, 908
CviAII	CATG	5 cut(s)	102, 130, 193, 241, 675
CviQI	GTAC	6 cut(s)	73, 238, 487, 524, 713, 908
DdeI	CTNAG	5 cut(s)	83, 327, 541, 669, 863
DinI	GGCGCC	1 cut(s)	610
DpnI	GATC	8 cut(s)	45, 134, 175, 200, 298, 514, 627, 746
DpnII	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	184, 764
Eco57I	CTGAAG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	285
EgeI	GGCGCC	1 cut(s)	610
EheI	GGCGCC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	105, 133, 196, 244, 678
FaiI	YATR	9 cut(s)	103, 131, 194, 242, 372, 387, 404, 676, 708
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	5 cut(s)	101, 129, 192, 240, 674
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	312
FokI	GGATG	2 cut(s)	120, 230
FriOI	GRGCYC	1 cut(s)	285
FspI	TGCGCA	1 cut(s)	375
GlaI	GCGC	2 cut(s)	375, 610
GsaI	CCCAGC	2 cut(s)	38, 252
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	463
HapII	CCGG	3 cut(s)	140, 606, 797
HhaI	GCGC	2 cut(s)	376, 611
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	5 cut(s)	105, 133, 196, 244, 678
Hin6I	GCGC	2 cut(s)	374, 609
HinP1I	GCGC	2 cut(s)	374, 609
HincII	GTYRAC	2 cut(s)	259, 313
HindII	GTYRAC	2 cut(s)	259, 313
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	4 cut(s)	503, 539, 809, 867
HpaII	CCGG	3 cut(s)	140, 606, 797
HphI	GGTGA	2 cut(s)	370, 902
Hpy166II	GTNNAC	4 cut(s)	124, 259, 313, 524
Hpy188I	TCNGA	8 cut(s)	48, 97, 147, 154, 173, 659, 814, 866
Hpy188III	TCNNGA	6 cut(s)	59, 202, 475, 500, 543, 563
Hpy8I	GTNNAC	4 cut(s)	124, 259, 313, 524
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	6 cut(s)	24, 65, 696, 720, 883, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
HpyF3I	CTNAG	5 cut(s)	83, 327, 541, 669, 863
HpySE526I	ACGT	1 cut(s)	831
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	5 cut(s)	105, 133, 196, 244, 678
HspAI	GCGC	2 cut(s)	374, 609
KasI	GGCGCC	1 cut(s)	608
Kzo9I	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
LmnI	GCTCC	3 cut(s)	250, 678, 796
LweI	GCATC	3 cut(s)	52, 98, 101
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	8 cut(s)	45, 134, 175, 200, 298, 514, 627, 746
MboI	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
MboII	GAAGA	6 cut(s)	29, 80, 333, 551, 584, 860
MflI	RGATCY	2 cut(s)	173, 512
MhlI	GDGCHC	2 cut(s)	285, 819
MluCI	AATT	5 cut(s)	53, 527, 732, 738, 800
Mly113I	GGCGCC	1 cut(s)	609
MlyI	GAGTC	2 cut(s)	533, 861
MmeI	TCCRAC	1 cut(s)	490
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	3 cut(s)	140, 606, 797
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	3 cut(s)	187, 617, 893
NarI	GGCGCC	1 cut(s)	609
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
NlaIII	CATG	5 cut(s)	105, 133, 196, 244, 678
NlaIV	GGNNCC	4 cut(s)	246, 514, 610, 765
NsbI	TGCGCA	1 cut(s)	375
NspV	TTCGAA	1 cut(s)	736
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	503, 809
Pfl23II	CGTACG	1 cut(s)	907
Ple19I	CGATCG	1 cut(s)	747
PleI	GAGTC	2 cut(s)	533, 861
PluTI	GGCGCC	1 cut(s)	612
PpsI	GAGTC	2 cut(s)	533, 861
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	2 cut(s)	34, 248
PspGI	CCWGG	1 cut(s)	634
PspLI	CGTACG	1 cut(s)	907
PspN4I	GGNNCC	4 cut(s)	246, 514, 610, 765
PspPI	GGNCC	3 cut(s)	184, 462, 764
PsuI	RGATCY	2 cut(s)	173, 512
PvuI	CGATCG	1 cut(s)	747
RsaI	GTAC	6 cut(s)	74, 239, 488, 525, 714, 909
RsaNI	GTAC	6 cut(s)	73, 238, 487, 524, 713, 908
RseI	CAYNNNNRTG	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	651
Sau3AI	GATC	8 cut(s)	43, 132, 173, 198, 296, 512, 625, 744
Sau96I	GGNCC	3 cut(s)	184, 462, 764
SchI	GAGTC	2 cut(s)	533, 861
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	285, 819
SfaNI	GCATC	3 cut(s)	52, 98, 101
SfcI	CTRYAG	1 cut(s)	853
SfoI	GGCGCC	1 cut(s)	610
SfuI	TTCGAA	1 cut(s)	736
SinI	GGWCC	2 cut(s)	184, 764
SmiMI	CAYNNNNRTG	1 cut(s)	106
Sse9I	AATT	5 cut(s)	53, 527, 732, 738, 800
SsiI	CCGC	2 cut(s)	227, 398
SspDI	GGCGCC	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	4 cut(s)	312, 736, 743, 823
TaqII	GACCGA	1 cut(s)	781
TasI	AATT	5 cut(s)	53, 527, 732, 738, 800
TatI	WGTACW	4 cut(s)	72, 486, 523, 712
TfiI	GAWTC	2 cut(s)	503, 809
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	171, 238, 387
TspDTI	ATGAA	2 cut(s)	173, 585
TspRI	CASTG	3 cut(s)	171, 238, 387
VpaK11BI	GGWCC	2 cut(s)	184, 764
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	3 cut(s)	53, 738, 800
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.