Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

5940644 .. 5942246

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGGATGCTTCAGGCTTGTGAACCACATGATCCCACCGGCTCTGATGTCGGAGATGAAATCAGTGGTCAGATCTTTGCTGGACCTGCCCATGGATCGATCAAGAAGCAGAACAAAGATGTGATAGCGGGCAGTGGATACATGGCTCCCAGCAAAGTCAACCCTCTCTACGAAGCTTTGGGGCTCTACGACTTGGGATCGGGTCAGACTGTCGACAGCTTTTGCTCTCAGTTGAATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTATGCTCAAGCAGTGTATGAGCAGATTGTGGATATAGGACAAAGGTTGGCAGAGAGTTTAGGGATGGCTGATAGTGATTATCTCAAGGGGTGGCCATGCCAGTTCAGGATAAACAAATACAACTTCACTCCTGAATCGGTTGGATCCTCTGGTGTACAATTACACACAGATTCAGGATTTTTAACCATTCTTCAAGACGATGAAAATGTCGGTGGTTTGGAAGTGATGGACAAATCTGGCGCCTTTGTAGCCGTTGATCCTTGCCCAGGCACTCTCCTTGTTAATCTAGGGGATGTTGCTAAGGCATGGAGCAATGGGAGGTTGTGCAATGTGAAGCATAGAGTACAATGCAGGGAGGCAACAATTCGAATTTCGGTCGCTACATTCCTCTTGGGACCGAAGGAGGAGGCGGTAGTGGAAGCTCCGGCGGAGTTTGTGGATTCCGAGCACCCTCGACTTTACGTTCCTTTTACTTACGAAGATTACAGAAAGCTCAGACTCTCCACAAAACTACAAGCTGGTGAAGCCCTTGCACTCATGCGCACCCCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

275

Amino Acids

29.79

Weight (kDa)

4.94

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	812
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	3 cut(s)	128, 680, 698
AclWI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	2 cut(s)	426, 615
AfiI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
AgsI	TTSAA	2 cut(s)	235, 464
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	5 cut(s)	176, 219, 692, 763, 788
AluI	AGCT	5 cut(s)	176, 219, 692, 763, 788
Alw21I	GWGCWC	1 cut(s)	720
AlwI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
AoxI	GGCC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	639
AspLEI	GCGC	2 cut(s)	512, 813
AspS9I	GGNCC	2 cut(s)	83, 665
AsuHPI	GGTGA	2 cut(s)	271, 803
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	83, 665
BalI	TGGCCA	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	720
BccI	CCATC	2 cut(s)	328, 490
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	94
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	2 cut(s)	83, 665
BmgT120I	GGNCC	2 cut(s)	83, 665
BmiI	GGNNCC	4 cut(s)	147, 415, 511, 666
BmrFI	CCNGG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	2 cut(s)	261, 338
Bsa29I	ATCGAT	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	91, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 256, 536
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	2 cut(s)	589, 604
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	91, 535
BseGI	GGATG	3 cut(s)	12, 339, 568
BseLI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BseMI	GCAATG	2 cut(s)	589, 604
BseMII	CTCAG	2 cut(s)	242, 778
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	689
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	39, 695
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	3 cut(s)	92, 256, 536
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	186, 720
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	3 cut(s)	128, 680, 698
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	241, 777
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	4 cut(s)	147, 415, 511, 666
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	6 cut(s)	26, 103, 205, 408, 421, 521
BspT104I	TTCGAA	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	589, 604
BsrFI	RCCGGY	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	91, 535
BssMI	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	424
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	228, 570, 764
BstDSI	CCRYGG	1 cut(s)	91
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	3 cut(s)	12, 339, 568
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	2 cut(s)	512, 813
BstKTI	GATC	7 cut(s)	34, 75, 98, 102, 200, 416, 529
BstMBI	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 518, 794
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	72, 413
BstYI	RGATCY	2 cut(s)	72, 413
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	364
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	12, 339, 568
BtsI	GCAGTG	2 cut(s)	139, 288
BtsIMutI	CAGTG	3 cut(s)	70, 139, 288
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	2 cut(s)	512, 813
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	83, 665
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	425, 614
CviAII	CATG	6 cut(s)	29, 92, 142, 366, 576, 808
CviQI	GTAC	2 cut(s)	425, 614
DdeI	CTNAG	3 cut(s)	228, 570, 764
DinI	GGCGCC	1 cut(s)	511
DpnI	GATC	7 cut(s)	33, 74, 97, 101, 199, 415, 528
DpnII	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
EaeI	YGGCCR	1 cut(s)	362
EciI	GGCGGA	1 cut(s)	713
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	83, 665
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	511
EheI	GGCGCC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	6 cut(s)	32, 95, 145, 369, 579, 811
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	6 cut(s)	28, 91, 141, 365, 575, 807
FauI	CCCGC	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	213
FokI	GGATG	3 cut(s)	19, 346, 575
FriOI	GRGCYC	1 cut(s)	186
FspAI	RTGCGCAY	1 cut(s)	812
FspBI	CTAG	1 cut(s)	557
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	2 cut(s)	511, 812
GsaI	CCCAGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	2 cut(s)	39, 695
HhaI	GCGC	2 cut(s)	512, 813
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	32, 95, 145, 369, 579, 811
Hin6I	GCGC	2 cut(s)	510, 811
HinP1I	GCGC	2 cut(s)	510, 811
HincII	GTYRAC	2 cut(s)	160, 214
HindII	GTYRAC	2 cut(s)	160, 214
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	404, 440, 710, 768
HpaII	CCGG	2 cut(s)	39, 695
HphI	GGTGA	2 cut(s)	271, 803
Hpy166II	GTNNAC	4 cut(s)	23, 160, 214, 425
Hpy188I	TCNGA	6 cut(s)	46, 53, 72, 207, 715, 767
Hpy188III	TCNNGA	5 cut(s)	103, 376, 401, 444, 464
Hpy8I	GTNNAC	4 cut(s)	23, 160, 214, 425
HpyAV	CCTTC	1 cut(s)	664
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	597, 621, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 518, 794
HpyF3I	CTNAG	3 cut(s)	228, 570, 764
HpySE526I	ACGT	1 cut(s)	732
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	32, 95, 145, 369, 579, 811
HspAI	GCGC	2 cut(s)	510, 811
KasI	GGCGCC	1 cut(s)	509
Kzo9I	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
LmnI	GCTCC	3 cut(s)	151, 579, 697
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	1 cut(s)	732
MalI	GATC	7 cut(s)	33, 74, 97, 101, 199, 415, 528
MboI	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
MboII	GAAGA	3 cut(s)	234, 452, 761
MflI	RGATCY	2 cut(s)	72, 413
MhlI	GDGCHC	2 cut(s)	186, 720
MlsI	TGGCCA	1 cut(s)	364
MluCI	AATT	3 cut(s)	428, 633, 639
MluNI	TGGCCA	1 cut(s)	364
Mly113I	GGCGCC	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	2 cut(s)	31, 391
MnlI	CCTC	9 cut(s)	174, 250, 427, 582, 619, 667, 668, 670, 732
Mox20I	TGGCCA	1 cut(s)	364
MscI	TGGCCA	1 cut(s)	364
MseI	TTAA	2 cut(s)	452, 552
Msp20I	TGGCCA	1 cut(s)	364
MspI	CCGG	2 cut(s)	39, 695
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	3 cut(s)	86, 518, 794
NarI	GGCGCC	1 cut(s)	510
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
NlaIII	CATG	6 cut(s)	32, 95, 145, 369, 579, 811
NlaIV	GGNNCC	4 cut(s)	147, 415, 511, 666
NsbI	TGCGCA	1 cut(s)	812
NspV	TTCGAA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	404, 440, 710
PleI	GAGTC	1 cut(s)	762
PluTI	GGCGCC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	4 cut(s)	147, 415, 511, 666
PspPI	GGNCC	2 cut(s)	83, 665
PsuI	RGATCY	2 cut(s)	72, 413
RsaI	GTAC	2 cut(s)	426, 615
RsaNI	GTAC	2 cut(s)	425, 614
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	452, 552
Sau3AI	GATC	7 cut(s)	31, 72, 95, 99, 197, 413, 526
Sau96I	GGNCC	2 cut(s)	83, 665
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	2 cut(s)	186, 720
SfoI	GGCGCC	1 cut(s)	511
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	83, 665
SmlI	CTYRAG	2 cut(s)	276, 353
SmoI	CTYRAG	2 cut(s)	276, 353
Sse9I	AATT	3 cut(s)	428, 633, 639
SsiI	CCGC	3 cut(s)	128, 680, 698
SspDI	GGCGCC	1 cut(s)	509
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	4 cut(s)	98, 213, 637, 724
TaqII	GACCGA	2 cut(s)	634, 682
TasI	AATT	3 cut(s)	428, 633, 639
TatI	WGTACW	2 cut(s)	424, 613
TfiI	GAWTC	3 cut(s)	404, 440, 710
Tru1I	TTAA	2 cut(s)	452, 552
Tru9I	TTAA	2 cut(s)	452, 552
TscAI	CASTG	3 cut(s)	70, 139, 288
TspDTI	ATGAA	2 cut(s)	72, 486
TspRI	CASTG	3 cut(s)	70, 139, 288
VpaK11BI	GGWCC	2 cut(s)	83, 665
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	639
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.