pycom10g26880

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
28065171 .. 28065515
345 bp
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UTR
Exon/CDS
Intron
pycom10g26880.1

Sequence Viewer

Length: 345 bp
ATGGCTACATTTCTCTTGGGACCCAAGGAAGAAGCAGTTGAAGCTCTTCCAGAATTTGTGGATTCAGAGCAACCTCGACTCTGTGTCCCTTTTACCTATGAAGATTATAGAAAGCTCAGACTATCCACAAAAATGAGAGCTGGTGAAGCCCTTGAACTAGTACGCCCTCCATCCGAACAAGAAACTAGCTTATTATGTCATTCAATTTTCGACAGTGACAGACTCCATTCTGTTTTTGGCAAAACCTCCTCTTGCTTCGACATCACAATAACAAAATTATCTACTTCATTGATTACTGCTTGGTTTCGGTTTTCCTTGTTTGAGTTTTTATTTTTGTGCTTTTAA

Protein Analysis

115

Amino Acids

13.13

Weight (kDa)

5.14

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 3 cut(s) 41, 155, 204
AhdI GACNNNNNGTC 1 cut(s) 83
AhlI ACTAGT 1 cut(s) 157
AluBI AGCT 4 cut(s) 44, 115, 140, 189
AluI AGCT 4 cut(s) 44, 115, 140, 189
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 20
BccI CCATC 1 cut(s) 178
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 2 cut(s) 158, 186
Bme18I GGWCC 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 21, 22
BsaJI CCNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 238
BslFI GGGAC 2 cut(s) 33, 71
BsmFI GGGAC 2 cut(s) 33, 71
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 21, 22
BspQI GCTCTTC 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 41, 146
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 161
CviJI RGCY 6 cut(s) 5, 44, 115, 140, 149, 189
CviKI_1 RGCY 6 cut(s) 5, 44, 115, 140, 149, 189
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 116
DriI GACNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 3 cut(s) 99, 108, 196
FaqI GGGAC 2 cut(s) 33, 71
FokI GGATG 1 cut(s) 157
FspBI CTAG 2 cut(s) 158, 186
HinfI GANTC 3 cut(s) 62, 78, 222
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 67, 119, 175
Hpy188III TCNNGA 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 146
HpyF3I CTNAG 1 cut(s) 116
KflI GGGWCCC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 51
LpnPI CCDG 2 cut(s) 63, 126
MaeI CTAG 2 cut(s) 158, 186
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 3 cut(s) 38, 41, 113
MluCI AATT 3 cut(s) 53, 204, 275
MlyI GAGTC 2 cut(s) 72, 216
MnlI CCTC 4 cut(s) 84, 177, 256, 259
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 343
MslI CAYNNNNRTG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 41, 146
NlaIV GGNNCC 2 cut(s) 21, 22
NmuCI GTSAC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 62
PleI GAGTC 2 cut(s) 72, 216
PpsI GAGTC 2 cut(s) 72, 216
PpuMI RGGWCCY 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 21, 22
PspPI GGNCC 1 cut(s) 20
PspPPI RGGWCCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 2 cut(s) 72, 216
SetI ASST 7 cut(s) 46, 76, 98, 117, 142, 191, 248
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 157
Sse9I AATT 3 cut(s) 53, 204, 275
SspMI CTAG 2 cut(s) 158, 186
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 76, 210, 258
TasI AATT 3 cut(s) 53, 204, 275
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 343
Tru9I TTAA 1 cut(s) 343
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 114, 276
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 158, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.