Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

18382523 .. 18383249

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1226300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGCATAGAGGTGATAGAGAAGTATGCTGAAGCAACATCTGAGCAGGTTGTGGACATTGGGAAGAAGTTGGCAGAAAGTCTAGGGGTGGCCAACACTGATTTCCACAAGGGATGGCCTTGCCAATTCATGACGAACAAATACAACTTCTCTCCTGCATCAATGGGGTCCCTTGGTCTACAAGAACACACAGATTCTGGATTTCTAACAATTCTTCAAAAAGATGAAGATGTTGGTGGTCTGGAAGTGGTGAACAAATTAGGTGCCTTTGTGCCTGTTTGGAGCAATGGGAGGTTGCACAATGTGAGGCATAGAGTAAAATGCTCGGAGGCTAGTATTCGAGTTTCGATCACCACATTTCTCAGCGGACCAAAAGAGGAAGCGATAGAAGCTCCGCTGGAACTGGTAGATTCGGACCACCCTCGTCTCTACGTCCCTTTTGTTTACGACAATTATAGAGTTAGCAAGTTCAAATTGCTCGAAAAATTACAGGCTGATAAAGCCCTTGCACTCTTACGCATCCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

177

Amino Acids

19.64

Weight (kDa)

5.96

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	42 - 121	8.5e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	2 cut(s)	366, 395
AcoI	YGGCCR	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	218, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	90, 116
AspS9I	GGNCC	3 cut(s)	168, 368, 415
AsuHPI	GGTGA	3 cut(s)	25, 262, 343
AvaII	GGWCC	3 cut(s)	168, 368, 415
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	263
BccI	CCATC	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	2 cut(s)	83, 333
BfuAI	ACCTGC	1 cut(s)	37
Bme18I	GGWCC	3 cut(s)	168, 368, 415
BmgT120I	GGNCC	3 cut(s)	168, 368, 415
BmiI	GGNNCC	3 cut(s)	169, 170, 265
BmsI	GCATC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	119, 519
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	33, 376
BseNI	ACTGG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	92, 118
BshNI	GGYRCC	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	154, 419
BsmAI	GTCTC	1 cut(s)	431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	154, 419
BsnI	GGCC	2 cut(s)	92, 118
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	2 cut(s)	366, 395
BspANI	GGCC	2 cut(s)	92, 118
BspCNI	CTCAG	2 cut(s)	34, 375
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	169, 170, 265
BspMI	ACCTGC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	42, 362
BstF5I	GGATG	2 cut(s)	119, 519
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 500
BsuRI	GGCC	2 cut(s)	92, 118
BtsCI	GGATG	2 cut(s)	119, 519
BtsIMutI	CAGTG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	37
CaiI	CAGNNNCTG	1 cut(s)	197
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	3 cut(s)	168, 368, 415
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	6 cut(s)	92, 118, 332, 392, 494, 503
CviKI_1	RGCY	6 cut(s)	92, 118, 332, 392, 494, 503
DdeI	CTNAG	2 cut(s)	42, 362
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraIII	CACNNNGTG	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	168, 368, 415
Eco57I	CTGAAG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	8, 27, 131, 312, 456
FaqI	GGGAC	2 cut(s)	154, 419
FatI	CATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	178
FokI	GGATG	2 cut(s)	126, 506
FspBI	CTAG	2 cut(s)	83, 333
HaeIII	GGCC	2 cut(s)	92, 118
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	2 cut(s)	194, 410
HphI	GGTGA	3 cut(s)	25, 262, 343
Hpy166II	GTNNAC	4 cut(s)	55, 179, 253, 445
Hpy188I	TCNGA	3 cut(s)	43, 328, 415
Hpy188III	TCNNGA	3 cut(s)	130, 198, 242
Hpy8I	GTNNAC	4 cut(s)	55, 179, 253, 445
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	4 cut(s)	6, 158, 298, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 500
HpyF3I	CTNAG	2 cut(s)	42, 362
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	1 cut(s)	133
KflI	GGGWCCC	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	348
LmnI	GCTCC	2 cut(s)	282, 397
LpnPI	CCDG	8 cut(s)	32, 168, 183, 227, 288, 383, 389, 476
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	83, 333
MaeII	ACGT	1 cut(s)	432
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	3 cut(s)	76, 206, 239
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	6 cut(s)	125, 210, 257, 451, 473, 485
MluNI	TGGCCA	1 cut(s)	92
MnlI	CCTC	6 cut(s)	4, 285, 300, 322, 370, 432
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	2 cut(s)	366, 397
MwoI	GCNNNNNNNGC	2 cut(s)	389, 500
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	3 cut(s)	169, 170, 265
PagI	TCATGA	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	194, 410
PpuMI	RGGWCCY	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	169, 170, 265
PspPI	GGNCC	3 cut(s)	168, 368, 415
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	3 cut(s)	168, 368, 415
SetI	ASST	6 cut(s)	15, 51, 265, 296, 394, 435
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	3 cut(s)	168, 368, 415
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	6 cut(s)	125, 210, 257, 451, 473, 485
SsiI	CCGC	2 cut(s)	366, 395
SspMI	CTAG	2 cut(s)	83, 333
StyI	CCWWGG	1 cut(s)	172
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	340, 347, 480
TasI	AATT	6 cut(s)	125, 210, 257, 451, 473, 485
TfiI	GAWTC	2 cut(s)	194, 410
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	118, 240
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	3 cut(s)	168, 368, 415
XmiI	GTMKAC	1 cut(s)	178
XspI	CTAG	2 cut(s)	83, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.