Rorug06G0383800

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
52944384 .. 52948531
4148 bp
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UTR
Exon/CDS
Intron
Rorug06G0383800.1

Sequence Viewer

Length: 606 bp
ATGGAGCTTCCGCTCATATCACTAACAACTCTTATTACTTCGACGGCGTCGTTTGGAAGTAAGGTCTGTGCGATTTTCCAGTGTCCTCTATTTTGTTCGACGGAGCTTGTGTTTCGACGGAGTAGTGAGGGTATTAATGGAAGGGAGGCGGAGAGTGGAGGAAGATGGTTCACAATTCCTGCAGTAGAGGTCACCACATTGAATATGAGCTTCAACGATTTAGATACTGAAGCTACGTGGCTCATTGAGAAAAATCTTGCGTGCATTACAACTGGAAGCCAAGCCCTTGATGAACTATTAGGCGGTGGGATTGAAACTATCGCAATCACAGAAGCCTTTGGCAAATTTAGCTTCCTACTGACATGCATGGAGGGAATGGAAAGGCTGCTTACATCAATACAGAAGGAACTTTCTGCAAAAATGGCTAAAGAGCCATTAAGACTTCTGGTTATGGATTCGGTGATTTCTCTCTTTCGAGTGGATGTTACTGGAAGAGGAGAACTTGGAGATTGCCAGCAAAAACTTGCACAGATGCTTTCCCTTTTAATAAAGATTGCTGAGGAATTCAATGTTGCTGTCTACATGACAAACTACGGTAATCATTGA

Protein Analysis

201

Amino Acids

22.08

Weight (kDa)

4.75

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 84 - 117 2.8e-08 Rad51
Rad51 PF08423 133 - 197 1.2e-19 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 579
AciI CCGC 3 cut(s) 11, 149, 303
AcsI RAATTY 2 cut(s) 344, 563
AcuI CTGAAG 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 47
AgsI TTSAA 4 cut(s) 202, 214, 314, 568
AluBI AGCT 5 cut(s) 7, 106, 210, 233, 351
AluI AGCT 5 cut(s) 7, 106, 210, 233, 351
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 2 cut(s) 344, 563
AseI ATTAAT 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 184, 472
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 372
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
BmsI GCATC 1 cut(s) 522
Bpu10I CCTNAGC 1 cut(s) 558
BsaAI YACGTR 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse1I ACTGG 3 cut(s) 79, 277, 493
BseGI GGATG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 3 cut(s) 79, 277, 493
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 372
BspACI CCGC 3 cut(s) 11, 149, 303
BspCNI CTCAG 1 cut(s) 550
BspMAI CTGCAG 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 13
BsrI ACTGG 3 cut(s) 79, 277, 493
BssNI GRCGYC 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 262, 515
BstDEI CTNAG 1 cut(s) 558
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 487
BstMWI GCNNNNNNNGC 2 cut(s) 348, 422
BstNSI RCATGY 1 cut(s) 366
BstPI GGTNACC 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 262, 515
CseI GACGC 1 cut(s) 36
CviAII CATG 3 cut(s) 363, 367, 583
DdeI CTNAG 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EciI GGCGGA 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 190
EcoO65I GGTNACC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 368
FaeI CATG 3 cut(s) 366, 370, 586
FaiI YATR 6 cut(s) 17, 206, 364, 368, 452, 584
FatI CATG 3 cut(s) 362, 366, 582
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 386
HgaI GACGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 3 cut(s) 366, 370, 586
HinfI GANTC 1 cut(s) 455
HphI GGTGA 2 cut(s) 184, 472
Hpy166II GTNNAC 2 cut(s) 171, 580
Hpy8I GTNNAC 2 cut(s) 171, 580
Hpy99I CGWCG 4 cut(s) 46, 52, 103, 120
HpyAV CCTTC 2 cut(s) 135, 397
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 5 cut(s) 182, 264, 366, 416, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 422
HpyF3I CTNAG 1 cut(s) 558
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 366, 370, 586
LmnI GCTCC 2 cut(s) 4, 103
LpnPI CCDG 6 cut(s) 92, 192, 258, 431, 474, 527
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 1 cut(s) 522
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 190, 484
MbiI CCGCTC 1 cut(s) 13
MboII GAAGA 2 cut(s) 174, 504
MluCI AATT 3 cut(s) 174, 344, 563
MnlI CCTC 8 cut(s) 96, 121, 139, 152, 181, 364, 488, 553
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 3 cut(s) 135, 437, 545
MwoI GCNNNNNNNGC 2 cut(s) 348, 422
NlaIII CATG 3 cut(s) 366, 370, 586
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 135
PspEI GGTNACC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 135, 437, 545
SatI GCNGC 1 cut(s) 386
SetI ASST 8 cut(s) 9, 66, 108, 192, 212, 235, 239, 353
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 1 cut(s) 180
Sse9I AATT 3 cut(s) 174, 344, 563
SsiI CCGC 3 cut(s) 11, 149, 303
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 41, 98, 115, 475
TasI AATT 3 cut(s) 174, 344, 563
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 3 cut(s) 135, 437, 545
Tru9I TTAA 3 cut(s) 135, 437, 545
TscAI CASTG 1 cut(s) 86
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 2 cut(s) 116, 133
TspRI CASTG 1 cut(s) 86
Tth111I GACNNNGTC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 135
XapI RAATTY 2 cut(s) 344, 563
XceI RCATGY 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.