Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

8347438 .. 8348768

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTTTCCGGTGATTGATCTGAATCAGTTTCCAGATCCTGAAGGGTACAAGAAGCTGAGGGAAGCATCAGAGCAATGGGGTTGCTTCAGGCTAGTCAACCACAAGATCCCATTGTCTCTCATGTCAGAGATGAAGAAGGTGGTCAGATCTCTTCTTGATCTGCCCACGGAGATCAAGAAGAACAACCCTGATGTCATATATGGCAGTGGCTACGTCGCACCCAGCAAGGTCAACCCTCTCAATGAGGGTTTGGGTCTCTGTTACTTGGGATCATCTGAGACTGTGCACACCTTTTGCTCACAGTTGTGTGCTTCTTCCTACCAGAGAGAGGTAATAGAGAAGTATGCAGAAGCAGTTTATGAGCAGATGATGGATTTAGGGGACAAGTTGGCACAGAGTTTTGGGCTGCAGAGTGATTTTCTGAAGGAATGGCTGTGCCAGTTTAGGTTTAACAAGTACAACTTCACTTCCGAATCCGTGGGATCTCCCGGACTTGAGCTACACACCGATTCGGGATTTCTGACCATTCTTCAAGATGATGAAAGTGTTGGTGGTCTGGAAGTGATGGACAGGCAGTCTGGTGCTTTGGTACCAATTGATCCTTGTCCAGGCACTTTCGTTGTCAATGTTGGAGACACTGCTAAGGCATGGAGCAATGGAAGGCTGTGCAATGGGAGGCACAGAGTGCAATGCAAGGAGGGCAGCGTTCGAGTCTCCATTGCTTTTCTTCTGTTGGGACCAAAGGATGAGGAAGCAGTGGAAGCCCCTCTGGAATTTGTTGATTCGGAGCACCCACGTCTCTATGTCCCTTTCACTTATGAAGAATTCAGAAAGATCAGGCTCTCCAAACATTTGCGAGATGGTGATGCTCTTGAACTTGTGCGCATCAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

300

Amino Acids

33.6

Weight (kDa)

5.3

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	4 - 63	2.3e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	148 - 244	2.3e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	887
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AclWI	GGATC	5 cut(s)	32, 103, 280, 493, 596
AcsI	RAATTY	2 cut(s)	776, 827
AcuI	CTGAAG	3 cut(s)	63, 73, 446
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	3 cut(s)	50, 461, 594
AfiI	CCNNNNNNNGG	2 cut(s)	331, 611
AgsI	TTSAA	2 cut(s)	536, 878
AhdI	GACNNNNNGTC	1 cut(s)	577
AjiI	CACGTC	1 cut(s)	800
AjnI	CCWGG	1 cut(s)	610
AleI	CACNNNNGTG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	58, 502
AluI	AGCT	2 cut(s)	58, 502
Alw21I	GWGCWC	2 cut(s)	291, 795
Alw26I	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 806
Alw44I	GTGCAC	1 cut(s)	287
AlwI	GGATC	5 cut(s)	32, 103, 280, 493, 596
AlwNI	CAGNNNCTG	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	409, 705
ApoI	RAATTY	2 cut(s)	776, 827
Asp718I	GGTACC	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	25, 878
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	291, 795
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	396, 717
BccI	CCATC	3 cut(s)	367, 562, 857
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 806
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	2 cut(s)	410, 706
BlsI	GCNGC	2 cut(s)	411, 707
Bme1390I	CCNGG	2 cut(s)	492, 612
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmgBI	CACGTC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	594, 741
BmrFI	CCNGG	2 cut(s)	492, 612
BmsI	GCATC	2 cut(s)	77, 859
Bpu10I	CCTNAGC	2 cut(s)	59, 645
BpuEI	CTTGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	168, 480
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 611
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	168, 480
BseGI	GGATG	1 cut(s)	754
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	331, 611
BseMI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
BseMII	CTCAG	2 cut(s)	50, 270
BseNI	ACTGG	1 cut(s)	442
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	396, 717
BseYI	CCCAGC	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	291, 795
BsiSI	CCGG	2 cut(s)	11, 492
BslFI	GGGAC	3 cut(s)	398, 753, 794
BslI	CCNNNNNNNGG	2 cut(s)	331, 611
BsmAI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 806
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	3 cut(s)	398, 753, 794
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	291, 795
BspCNI	CTCAG	2 cut(s)	51, 271
BspLI	GGNNCC	2 cut(s)	594, 741
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	5 cut(s)	32, 103, 280, 493, 596
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	5 cut(s)	83, 664, 679, 698, 720
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	168, 480
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	286, 306
Bst6I	CTCTTC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	688
BstDEI	CTNAG	3 cut(s)	59, 279, 645
BstDSI	CCRYGG	2 cut(s)	168, 480
BstENI	CCTNNNNNAGG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	754
BstHHI	GCGC	1 cut(s)	888
BstMAI	GTCTC	6 cut(s)	123, 263, 275, 630, 721, 806
BstMWI	GCNNNNNNNGC	3 cut(s)	688, 702, 764
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	490, 610
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	396, 717
BstX2I	RGATCY	4 cut(s)	37, 108, 149, 485
BstYI	RGATCY	4 cut(s)	37, 108, 149, 485
BtgI	CCRYGG	2 cut(s)	168, 480
BtrI	CACGTC	1 cut(s)	800
BtsCI	GGATG	1 cut(s)	754
BtsI	GCAGTG	3 cut(s)	214, 639, 765
BtsIMutI	CAGTG	3 cut(s)	214, 639, 765
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	49, 460, 593
CviAII	CATG	2 cut(s)	124, 651
CviQI	GTAC	3 cut(s)	49, 460, 593
DdeI	CTNAG	3 cut(s)	59, 279, 645
DraIII	CACNNNGTG	1 cut(s)	688
DriI	GACNNNNNGTC	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	3 cut(s)	63, 73, 446
EcoNI	CCTNNNNNAGG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	2 cut(s)	127, 654
FaiI	YATR	9 cut(s)	125, 200, 202, 204, 348, 363, 652, 807, 822
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	3 cut(s)	398, 753, 794
FatI	CATG	2 cut(s)	123, 650
Fnu4HI	GCNGC	2 cut(s)	410, 706
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	2 cut(s)	410, 706
FspAI	RTGCGCAY	1 cut(s)	887
FspBI	CTAG	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	887
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	2 cut(s)	410, 706
GsaI	CCCAGC	1 cut(s)	228
HapII	CCGG	2 cut(s)	11, 492
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	2 cut(s)	127, 654
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HincII	GTYRAC	2 cut(s)	100, 235
HindII	GTYRAC	2 cut(s)	100, 235
HinfI	GANTC	5 cut(s)	25, 476, 512, 714, 785
HpaII	CCGG	2 cut(s)	11, 492
HphI	GGTGA	2 cut(s)	25, 878
Hpy166II	GTNNAC	3 cut(s)	100, 235, 289
Hpy188III	TCNNGA	9 cut(s)	35, 41, 158, 178, 516, 536, 560, 773, 875
Hpy8I	GTNNAC	3 cut(s)	100, 235, 289
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	38, 133, 421, 657
HpyCH4III	ACNGT	2 cut(s)	286, 306
HpyCH4IV	ACGT	2 cut(s)	216, 799
HpyCH4V	TGCA	6 cut(s)	289, 350, 412, 672, 691, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	688, 702, 764
HpyF3I	CTNAG	3 cut(s)	59, 279, 645
HpySE526I	ACGT	2 cut(s)	216, 799
Hsp92II	CATG	2 cut(s)	127, 654
HspAI	GCGC	1 cut(s)	886
KpnI	GGTACC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	654, 790
Lsp1109I	GCAGC	2 cut(s)	396, 717
LweI	GCATC	2 cut(s)	77, 859
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	216, 799
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	7 cut(s)	146, 148, 193, 309, 524, 722, 836
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	4 cut(s)	37, 108, 149, 485
MhlI	GDGCHC	2 cut(s)	291, 795
MluCI	AATT	3 cut(s)	597, 776, 827
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	8 cut(s)	54, 241, 249, 325, 672, 694, 745, 780
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	2 cut(s)	11, 492
MspR9I	CCNGG	2 cut(s)	492, 612
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	688, 702, 764
NciI	CCSGG	1 cut(s)	492
NlaIII	CATG	2 cut(s)	127, 654
NlaIV	GGNNCC	2 cut(s)	594, 741
NsbI	TGCGCA	1 cut(s)	887
OliI	CACNNNNGTG	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	25, 476, 512, 785
PfoI	TCCNGGA	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	411, 707
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	594, 741
PspPI	GGNCC	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	4 cut(s)	37, 108, 149, 485
RsaI	GTAC	3 cut(s)	50, 461, 594
RsaNI	GTAC	3 cut(s)	49, 460, 593
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	410, 706
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	492, 612
SduI	GDGCHC	2 cut(s)	291, 795
SetI	ASST	9 cut(s)	60, 144, 219, 234, 296, 336, 452, 504, 802
SfaNI	GCATC	2 cut(s)	77, 859
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	3 cut(s)	597, 776, 827
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	490, 610
TaaI	ACNGT	2 cut(s)	286, 306
TaiI	ACGT	2 cut(s)	219, 802
TaqI	TCGA	1 cut(s)	712
TasI	AATT	3 cut(s)	597, 776, 827
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	4 cut(s)	25, 476, 512, 785
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	3 cut(s)	214, 646, 765
TseI	GCWGC	2 cut(s)	409, 705
TspDTI	ATGAA	3 cut(s)	149, 558, 837
TspGWI	ACGGA	2 cut(s)	185, 469
TspRI	CASTG	3 cut(s)	214, 646, 765
VneI	GTGCAC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	609
XapI	RAATTY	2 cut(s)	776, 827
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.