RLG00000012686

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
21321485 .. 21321883
399 bp
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UTR
Exon/CDS
Intron
RLM00000012686

Sequence Viewer

Length: 399 bp
ATGGCGAAGGCATGGAGCAATAGGAGGCTCTGCAATGTAAAGCACAAAGTCGTATGCAAAGAAGCGATGATGGCGAAGGCACAAAAGTCTGGTGCTTTTGTGCCAATTTATCCTTGTCCACCCAGTCTCCTACTCAACCTAGGTGACATGGCGAGGGCATGGAGCAATGAAAGGCTCTACAATGTAAAGCACAGAGTTGTATGCAAAGAAGCAATGATGCATATATCAATAGCTTCCTTTTTGTTGGGACCAAAGAAGGAACAAGTTCAAACCCCTCCGAAATTTGTTGATGACGAGCATCCAAGGCTATACGCCCCAATCAAATACGGTCCCTACAGACAGCTTTGGCTCTCCAAAGAGACGCAGGTGGGTGATGCTCTGGAGTTGATGAAGCTGTGA

Protein Analysis

133

Amino Acids

15.13

Weight (kDa)

9.63

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 28 - 81 1.2e-07 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AcsI RAATTY 1 cut(s) 281
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 3 cut(s) 233, 343, 394
AluI AGCT 3 cut(s) 233, 343, 394
Alw26I GTCTC 2 cut(s) 131, 353
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 264
AspA2I CCTAGG 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 248, 329
AsuHPI GGTGA 2 cut(s) 155, 383
AvaII GGWCC 2 cut(s) 248, 329
AvrII CCTAGG 1 cut(s) 139
BccI CCATC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 131, 353
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 355
BlnI CCTAGG 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 248, 329
BmgT120I GGNCC 2 cut(s) 248, 329
BmiI GGNNCC 2 cut(s) 249, 331
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 207, 307, 364
BmuI ACTGGG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 139, 302
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 123
Bse3DI GCAATG 3 cut(s) 40, 172, 219
BseDI CCNNGG 2 cut(s) 139, 302
BseGI GGATG 1 cut(s) 298
BseMI GCAATG 3 cut(s) 40, 172, 219
BseNI ACTGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 261, 315
BsmAI GTCTC 2 cut(s) 131, 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 261, 315
BspLI GGNNCC 2 cut(s) 249, 331
BspMI ACCTGC 1 cut(s) 355
BsrDI GCAATG 3 cut(s) 40, 172, 219
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 139, 302
BssT1I CCWWGG 2 cut(s) 139, 302
Bst4CI ACNGT 1 cut(s) 329
BstF5I GGATG 1 cut(s) 298
BstMAI GTCTC 2 cut(s) 131, 353
BstMWI GCNNNNNNNGC 2 cut(s) 71, 304
BstSFI CTRYAG 1 cut(s) 334
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 248, 329
CseI GACGC 1 cut(s) 370
CviAII CATG 3 cut(s) 12, 148, 159
CviJI RGCY 7 cut(s) 28, 175, 233, 307, 343, 349, 394
CviKI_1 RGCY 7 cut(s) 28, 175, 233, 307, 343, 349, 394
Eco130I CCWWGG 2 cut(s) 139, 302
Eco47I GGWCC 2 cut(s) 248, 329
EcoT14I CCWWGG 2 cut(s) 139, 302
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 139, 302
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 3 cut(s) 15, 151, 162
FaiI YATR 8 cut(s) 13, 55, 149, 160, 202, 222, 224, 310
FaqI GGGAC 2 cut(s) 261, 315
FatI CATG 3 cut(s) 11, 147, 158
FokI GGATG 1 cut(s) 285
FspBI CTAG 1 cut(s) 140
HgaI GACGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 15, 151, 162
HphI GGTGA 2 cut(s) 155, 383
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 70, 250
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 4 cut(s) 33, 57, 204, 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 304
Hsp92II CATG 3 cut(s) 15, 151, 162
LmnI GCTCC 2 cut(s) 15, 162
LpnPI CCDG 4 cut(s) 75, 136, 350, 365
LweI GCATC 3 cut(s) 207, 307, 364
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 143
MluCI AATT 2 cut(s) 105, 281
MnlI CCTC 3 cut(s) 18, 147, 285
Mph1103I ATGCAT 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 71, 304
NlaIII CATG 3 cut(s) 15, 151, 162
NlaIV GGNNCC 2 cut(s) 249, 331
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 222
PaqCI CACCTGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 249, 331
PspPI GGNCC 2 cut(s) 248, 329
Sau96I GGNCC 2 cut(s) 248, 329
SetI ASST 6 cut(s) 141, 145, 235, 345, 369, 396
SfaNI GCATC 3 cut(s) 207, 307, 364
SfcI CTRYAG 1 cut(s) 334
SinI GGWCC 2 cut(s) 248, 329
Sse9I AATT 2 cut(s) 105, 281
SspMI CTAG 1 cut(s) 140
StyI CCWWGG 2 cut(s) 139, 302
TaaI ACNGT 1 cut(s) 329
TasI AATT 2 cut(s) 105, 281
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 183
VpaK11BI GGWCC 2 cut(s) 248, 329
XapI RAATTY 1 cut(s) 281
XmaJI CCTAGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.