Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

4418236 .. 4421118

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0057300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGGCACCCCCTAATGAACCTGTTAATCCAATTCGAAATTTGTTCCATTGTGCAAGTTCGGAACTCTACTTCGACTCGTCTGATGGAAAGTTGAGTGTGAAAGGTGTTCCACTGCTCTCTGAAGTTCCAACCAATGTCACTCTCAGTCCCTTTCATTCAATCTGCCAACCTTCTTCTTGTTCTGATGTTCCATCTCATCTGGTCCGACGCGTCTGTGCCTTGTCTCACAAGGCAGGGTTTCTTGCGTTCAATAAGGAGGAGCCTTCTGATAAGTTGACCAACTCCTTGGGTAGGTTCAGTAACAGGGATTTCCTTAGCATCTTTAGGTTCAAACCATGGTGGTCTACCATGTGGGTTGGGAAGTCTGGGTCGGATTTGCAGGTGGAGACACAATGGGTGCTCTTAGATATCGCTGAAATCAAGTCCTATGTCATAATCATACCGATCATTGAAGACAAATTCAGGTCTGCTCTTCTACCTGGTCCTGATGGTCATGTCATTATCTTTGCTGAGAGTGGTTGTACCGAAGTGAAAACTTCATATTTTGATGCCATCGCTTATGTTCATGCTTCTGATAATCCCTACACCTTGATGAAAGAGGCCTATAGTGCTCTTAGGGTTCATCTCAATACCTTTAGGCTCCTAGAAGAGAAAACAGTCCCAAGTTTAGTTGACAGGTTTGGTTGGTGCACTTGGGATGCCTTCTATTTAACTGTAGAACCTGTTGGTGTTTTCCATGGGGTCAAGGAATTTGTTGAAGCCGGTGTTCCCCCAAGGTTTATCATCATTGATGATGGCTGGCAAAGTATCAATTTTGACAGTGACGAAAACCCGAATGAGGACTCACAACTAATCCTTGGTGGGACTCAAATGACTGGTAGGCTTCACAGGTTTGAGGAGTGTGACAAGTTTAGGAACTACAAAGGAGGATCTTTGTTGGATCCTAACGCTCCTTCATATGATTCCAACAGGCAGAAGAAGTTGATAGCCAAGGCACTTGAAGTTGAGGATATTGAGAAGGCTCGTGACAGGGCCATTCAATCAGGAGTCACTGATTTGTCCGAGTTCAAAACACAATGGCAGAAGCCTAAGCAAGAGTTGGATGTGATGATTGCTGAAGAAGAAAAAATCAGTGGTTCTGCTTCTACCAATGGCTGTGGAAGCTATGGTGGAATGAAGGCTTTCACAAGCGACTTGAGAACCAAATATAAGGGTTTGGATGATATTTATGTATGGCATGCTCTTTGTGGTGCCTGGGGTGGTGTAAAGCCCGGCGCAACCCATCTCAATGCAAAGGTCACTGCTGTTAATGTCTCTTCTGGACTCGACGGGTCGATGACTGATCTTGCTGTGGTGAAACTCATAGAGGGTGGCATTGGACTTGTTCATCCTGATCAAGCTGACGATTTCTTCAATTCTATGCACTCCTATCTTTCTGAAGTTGGTATAACAGGAGTCAAAGTGGACGTTATTCATAGTCTTGAGTTTTTATGTGAGGAACACGGAGGCCGTCTGGAGCTTCCAAAGGCATATTACAAGGGGCTTACTTCTTCCCTTGTAAATAACTTCAATGGGACTGGACTTATTTCTAGCATGCAACAATGCAATGACTTCTTCTTCCTTGGGACTAAGCAAATCTCTATTGGAAGAGTTGGTGATGACTTTTGGTTCCGTGGTGGAGATGGAGATCCTATGGCAGTTTATTGGTTACAAGGAGTTCATATGATCCATTGTGCTTACAACAGCATGTGGATGAGTCAGTTCATCCAACCTGATTGGGATATGTTCCAATCAGAACATCCATGTGGCCAATTTCATGCAGCATCGCGGGCAATATGTGGAGGTCCGGTGTATGTGAGTGACTCGCTTGATTGTCATGATTTTGATCTCATCAAGAAGTTTGCTTACCCAGATGGAACCATTCCCAAGTGCCAGCATTTTGCCCTTCCAACTAAGGACTGTCTCTTCAAAAACCCTTTGAATGACAGCAAGTCCGCTCTCAAAATTTGGAACTTGAACAAGTATGCTGGTGTCATTGGAGCTTTCAACTGCCAAGGGGCTGGTTGGGATCCAAAAGAGCAAAAGATCAGAGGCTATCCCGAATGCTATGAGGAAATCCATTGTTCAGTGCATGTTTCTGAAATTGAATGGGACCAAAAGAAAGAAGCAGCCAATTTGGGCAAGGCTGAACAGTATGTGGTCTATCTCAACCAGACTGATGAACTCCTCCTCATGACCCCCAAGTCTGATCCAATTCAAATCACAATCAAACCATCTTCGTTCGAGATTTTCACCTTTGTGCCAGTTCAAAATCTCCACTCCAGCAACACTAAATTCGCGCCTATTGGACTGACCAACATGTTCAACAGTGGAGGCACCATCCAAGAGTTGGAGTACAATACTAGTTCGGTTTCTTCTAGTGTCAAGATGAAGGTTAAAGGTGGAGGCAATTTCTTGGCCTACTCGAGTGAGTCCCCAAAGAATTTCTGTTTGAATGGTGCTGAGGTGGATTTTGAGTGGTCTTCCTGTGGTAAACTGACCCTGAATCTTCCTTGGGTTGAAGAAGCTGCTGGAGTTTCGGATTTGGTTTTGGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

866

Amino Acids

96.28

Weight (kDa)

5.31

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	27 - 849	0.0	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
AasI	GACNNNNNNGTC	1 cut(s)	2242
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	3 cut(s)	4, 1250, 2375
AccB7I	CCANNNNNTGG	1 cut(s)	2389
AccBSI	CCGCTC	1 cut(s)	1997
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	3 cut(s)	210, 1828, 2339
AciI	CCGC	2 cut(s)	1828, 1995
AclWI	GGATC	8 cut(s)	935, 937, 948, 1682, 1720, 2063, 2076, 2243
AcoI	YGGCCR	1 cut(s)	1807
AcsI	RAATTY	6 cut(s)	37, 458, 749, 2004, 2333, 2482
AcuI	CTGAAG	3 cut(s)	141, 1137, 1458
AfaI	GTAC	2 cut(s)	523, 2396
AfiI	CCNNNNNNNGG	3 cut(s)	291, 838, 2389
AflIII	ACRYGT	2 cut(s)	208, 2358
AhdI	GACNNNNNGTC	1 cut(s)	1990
AhlI	ACTAGT	1 cut(s)	2402
AjnI	CCWGG	2 cut(s)	478, 1253
AleI	CACNNNNGTG	1 cut(s)	2297
AluBI	AGCT	5 cut(s)	1164, 1400, 1519, 2042, 2567
AluI	AGCT	5 cut(s)	1164, 1400, 1519, 2042, 2567
Alw21I	GWGCWC	3 cut(s)	402, 613, 692
Alw26I	GTCTC	4 cut(s)	228, 380, 1318, 1967
Alw44I	GTGCAC	1 cut(s)	688
AlwI	GGATC	8 cut(s)	935, 937, 948, 1682, 1720, 2063, 2076, 2243
Ama87I	CYCGRG	1 cut(s)	2464
AoxI	GGCC	5 cut(s)	600, 1032, 1507, 1807, 2457
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	3 cut(s)	1820, 2168, 2567
ApoI	RAATTY	6 cut(s)	37, 458, 749, 2004, 2333, 2482
Asp700I	GAANNNNTTC	1 cut(s)	1181
AspLEI	GCGC	2 cut(s)	1277, 2341
AspS9I	GGNCC	5 cut(s)	202, 482, 1032, 1844, 2152
AsuC2I	CCSGG	1 cut(s)	1272
AsuHPI	GGTGA	3 cut(s)	1366, 1667, 2284
AsuII	TTCGAA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	2464
AvaII	GGWCC	4 cut(s)	202, 482, 1844, 2152
BaeGI	GKGCMC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	1809
BamHI	GGATCC	2 cut(s)	940, 2068
BanI	GGYRCC	3 cut(s)	4, 1250, 2375
BarI	GAAGNNNNNNTAC	2 cut(s)	1889, 1921
BauI	CACGAG	1 cut(s)	1023
BbsI	GAAGAC	2 cut(s)	459, 2514
Bbv12I	GWGCWC	3 cut(s)	402, 613, 692
BbvCI	CCTCAGC	1 cut(s)	2502
BbvI	GCAGC	3 cut(s)	1832, 2180, 2554
BceAI	ACGGC	1 cut(s)	1494
BciT130I	CCWGG	2 cut(s)	480, 1255
BclI	TGATCA	1 cut(s)	1393
BcnI	CCSGG	1 cut(s)	1272
BcoDI	GTCTC	4 cut(s)	228, 380, 1318, 1967
BcuI	ACTAGT	1 cut(s)	2402
BfaI	CTAG	4 cut(s)	644, 1590, 2403, 2418
BfmI	CTRYAG	2 cut(s)	604, 714
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	3 cut(s)	1821, 2169, 2568
BlsI	GCNGC	3 cut(s)	1822, 2170, 2569
Bme1390I	CCNGG	3 cut(s)	480, 1255, 1272
Bme18I	GGWCC	4 cut(s)	202, 482, 1844, 2152
BmeRI	GACNNNNNGTC	1 cut(s)	1990
BmeT110I	CYCGRG	1 cut(s)	2464
BmgT120I	GGNCC	5 cut(s)	202, 482, 1032, 1844, 2152
BmrFI	CCNGG	3 cut(s)	480, 1255, 1272
BmsI	GCATC	4 cut(s)	327, 538, 688, 1832
BpiI	GAAGAC	2 cut(s)	459, 2514
BpmI	CTGGAG	3 cut(s)	1535, 2305, 2592
Bpu10I	CCTNAGC	3 cut(s)	314, 1089, 2502
Bpu14I	TTCGAA	1 cut(s)	34
BpuEI	CTTGAG	2 cut(s)	1216, 1502
BpuMI	CCSGG	1 cut(s)	1272
BsaBI	GATNNNNATC	2 cut(s)	1686, 1884
BsaWI	WCCGGW	1 cut(s)	1846
BsaXI	ACNNNNNCTCC	4 cut(s)	1446, 1476, 1833, 1863
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 838, 2389
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	3 cut(s)	880, 1582, 2303
Bse3DI	GCAATG	1 cut(s)	1612
Bse8I	GATNNNNATC	2 cut(s)	1686, 1884
BseBI	CCWGG	2 cut(s)	480, 1255
BseGI	GGATG	8 cut(s)	703, 1108, 1225, 1387, 1758, 1764, 1798, 2379
BseJI	GATNNNNATC	2 cut(s)	1686, 1884
BseLI	CCNNNNNNNGG	3 cut(s)	291, 838, 2389
BseMI	GCAATG	1 cut(s)	1612
BseMII	CTCAG	3 cut(s)	157, 501, 2493
BseNI	ACTGG	3 cut(s)	880, 1582, 2303
BseRI	GAGGAG	4 cut(s)	272, 911, 2216, 2219
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	3 cut(s)	1832, 2180, 2554
Bsh1236I	CGCG	3 cut(s)	210, 1828, 2339
BshFI	GGCC	5 cut(s)	602, 1034, 1509, 1809, 2459
BshNI	GGYRCC	3 cut(s)	4, 1250, 2375
BsiHKAI	GWGCWC	3 cut(s)	402, 613, 692
BsiHKCI	CYCGRG	1 cut(s)	2464
BsiSI	CCGG	3 cut(s)	762, 1272, 1847
BslFI	GGGAC	7 cut(s)	132, 644, 877, 1588, 1639, 2165, 2458
BslI	CCNNNNNNNGG	3 cut(s)	291, 838, 2389
BsmAI	GTCTC	4 cut(s)	228, 380, 1318, 1967
BsmFI	GGGAC	7 cut(s)	132, 644, 877, 1588, 1639, 2165, 2458
BsmI	GAATGC	1 cut(s)	2108
BsnI	GGCC	5 cut(s)	602, 1034, 1509, 1809, 2459
BsoBI	CYCGRG	1 cut(s)	2464
Bsp119I	TTCGAA	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	402, 613, 692
Bsp19I	CCATGG	2 cut(s)	335, 736
BspACI	CCGC	2 cut(s)	1828, 1995
BspANI	GGCC	5 cut(s)	602, 1034, 1509, 1809, 2459
BspCNI	CTCAG	3 cut(s)	156, 502, 2494
BspFNI	CGCG	3 cut(s)	210, 1828, 2339
BspHI	TCATGA	2 cut(s)	1876, 2232
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	8 cut(s)	935, 937, 948, 1682, 1720, 2063, 2076, 2243
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	34
BspT107I	GGYRCC	3 cut(s)	4, 1250, 2375
BsrBI	CCGCTC	1 cut(s)	1997
BsrDI	GCAATG	1 cut(s)	1612
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	880, 1582, 2303
BssAI	RCCGGY	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	9 cut(s)	285, 335, 736, 773, 856, 990, 1621, 2053, 2552
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	2 cut(s)	480, 1255
Bst4CI	ACNGT	6 cut(s)	658, 715, 821, 1961, 2193, 2369
Bst6I	CTCTTC	5 cut(s)	477, 642, 1321, 1642, 1970
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	5 cut(s)	800, 1239, 1595, 1830, 1934
BstDEI	CTNAG	9 cut(s)	143, 314, 403, 510, 614, 1089, 1629, 1953, 2502
BstDSI	CCRYGG	3 cut(s)	335, 736, 1672
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	8 cut(s)	703, 1108, 1225, 1387, 1758, 1764, 1798, 2379
BstFNI	CGCG	3 cut(s)	210, 1828, 2339
BstHHI	GCGC	2 cut(s)	1277, 2341
BstMAI	GTCTC	4 cut(s)	228, 380, 1318, 1967
BstMWI	GCNNNNNNNGC	3 cut(s)	608, 1161, 1829
BstNI	CCWGG	2 cut(s)	480, 1255
BstNSI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2362
BstSCI	CCNGG	3 cut(s)	478, 1253, 1270
BstSFI	CTRYAG	2 cut(s)	604, 714
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	3 cut(s)	210, 1828, 2339
BstV1I	GCAGC	3 cut(s)	1832, 2180, 2554
BstV2I	GAAGAC	2 cut(s)	459, 2514
BstX2I	RGATCY	4 cut(s)	929, 940, 1687, 2068
BstXI	CCANNNNNNTGG	2 cut(s)	286, 2060
BstYI	RGATCY	4 cut(s)	929, 940, 1687, 2068
BsuRI	GGCC	5 cut(s)	602, 1034, 1509, 1809, 2459
BtgI	CCRYGG	3 cut(s)	335, 736, 1672
BtgZI	GCGATG	2 cut(s)	538, 1809
BtsCI	GGATG	8 cut(s)	703, 1108, 1225, 1387, 1758, 1764, 1798, 2379
BtsI	GCAGTG	2 cut(s)	110, 1299
BtsIMutI	CAGTG	7 cut(s)	110, 826, 1050, 1138, 1299, 2133, 2374
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	5 cut(s)	800, 1239, 1595, 1830, 1934
CciI	TCATGA	2 cut(s)	1876, 2232
CfoI	GCGC	2 cut(s)	1277, 2341
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	5 cut(s)	202, 482, 1032, 1844, 2152
CseI	GACGC	2 cut(s)	199, 216
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	522, 2395
CspCI	CAANNNNNGTGG	2 cut(s)	1138, 1173
CviQI	GTAC	2 cut(s)	522, 2395
DdeI	CTNAG	9 cut(s)	143, 314, 403, 510, 614, 1089, 1629, 1953, 2502
DrdI	GACNNNNNNGTC	1 cut(s)	2242
DriI	GACNNNNNGTC	1 cut(s)	1990
DseDI	GACNNNNNNGTC	1 cut(s)	2242
EaeI	YGGCCR	1 cut(s)	1807
Eam1104I	CTCTTC	5 cut(s)	477, 642, 1321, 1642, 1970
Eam1105I	GACNNNNNGTC	1 cut(s)	1990
EarI	CTCTTC	5 cut(s)	477, 642, 1321, 1642, 1970
Eco130I	CCWWGG	9 cut(s)	285, 335, 736, 773, 856, 990, 1621, 2053, 2552
Eco147I	AGGCCT	1 cut(s)	602
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	4 cut(s)	202, 482, 1844, 2152
Eco57I	CTGAAG	3 cut(s)	141, 1137, 1458
Eco88I	CYCGRG	1 cut(s)	2464
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	478, 1253
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	9 cut(s)	285, 335, 736, 773, 856, 990, 1621, 2053, 2552
ErhI	CCWWGG	9 cut(s)	285, 335, 736, 773, 856, 990, 1621, 2053, 2552
FaqI	GGGAC	7 cut(s)	132, 644, 877, 1588, 1639, 2165, 2458
FauI	CCCGC	1 cut(s)	1821
FauNDI	CATATG	2 cut(s)	958, 1722
FbaI	TGATCA	1 cut(s)	1393
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	3 cut(s)	1821, 2169, 2568
FokI	GGATG	8 cut(s)	710, 1115, 1232, 1374, 1751, 1765, 1785, 2366
Fsp4HI	GCNGC	3 cut(s)	1821, 2169, 2568
FspBI	CTAG	4 cut(s)	644, 1590, 2403, 2418
GlaI	GCGC	2 cut(s)	1276, 2340
GluI	GCNGC	3 cut(s)	1821, 2169, 2568
GsuI	CTGGAG	3 cut(s)	1535, 2305, 2592
HaeIII	GGCC	5 cut(s)	602, 1034, 1509, 1809, 2459
HapII	CCGG	3 cut(s)	762, 1272, 1847
HgaI	GACGC	2 cut(s)	199, 216
HhaI	GCGC	2 cut(s)	1277, 2341
Hin6I	GCGC	2 cut(s)	1275, 2339
HinP1I	GCGC	2 cut(s)	1275, 2339
HincII	GTYRAC	2 cut(s)	276, 673
HindII	GTYRAC	2 cut(s)	276, 673
HpaII	CCGG	3 cut(s)	762, 1272, 1847
HphI	GGTGA	3 cut(s)	1366, 1667, 2284
Hpy166II	GTNNAC	6 cut(s)	276, 345, 673, 690, 1465, 2534
Hpy8I	GTNNAC	6 cut(s)	276, 345, 673, 690, 1465, 2534
Hpy99I	CGWCG	2 cut(s)	210, 1331
HpyAV	CCTTC	8 cut(s)	180, 273, 712, 963, 1012, 1171, 1955, 2425
HpyCH4III	ACNGT	6 cut(s)	658, 715, 821, 1961, 2193, 2369
HpyCH4IV	ACGT	1 cut(s)	1467
HpyCH4V	TGCA	9 cut(s)	53, 379, 690, 1292, 1423, 1597, 1605, 1820, 2131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	608, 1161, 1829
HpyF3I	CTNAG	9 cut(s)	143, 314, 403, 510, 614, 1089, 1629, 1953, 2502
HpySE526I	ACGT	1 cut(s)	1467
HspAI	GCGC	2 cut(s)	1275, 2339
Ksp22I	TGATCA	1 cut(s)	1393
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	5 cut(s)	259, 645, 955, 1516, 2039
Lsp1109I	GCAGC	3 cut(s)	1832, 2180, 2554
LweI	GCATC	4 cut(s)	327, 538, 688, 1832
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	4 cut(s)	644, 1590, 2403, 2418
MaeII	ACGT	1 cut(s)	1467
MaeIII	GTNAC	9 cut(s)	136, 299, 821, 902, 1025, 1048, 1297, 1707, 1859
MbiI	CCGCTC	1 cut(s)	1997
MflI	RGATCY	4 cut(s)	929, 940, 1687, 2068
MhlI	GDGCHC	3 cut(s)	402, 613, 692
MlsI	TGGCCA	1 cut(s)	1809
MluI	ACGCGT	1 cut(s)	208
MluNI	TGGCCA	1 cut(s)	1809
MlyI	GAGTC	9 cut(s)	68, 836, 859, 1056, 1317, 1464, 1765, 1856, 2480
MmeI	TCCRAC	9 cut(s)	152, 229, 351, 918, 990, 1080, 1792, 1973, 2370
Mox20I	TGGCCA	1 cut(s)	1809
MroXI	GAANNNNTTC	1 cut(s)	1181
MscI	TGGCCA	1 cut(s)	1809
MseI	TTAA	4 cut(s)	24, 710, 1308, 2436
MslI	CAYNNNNRTG	5 cut(s)	590, 1287, 1751, 1803, 2297
Msp20I	TGGCCA	1 cut(s)	1809
MspI	CCGG	3 cut(s)	762, 1272, 1847
MspR9I	CCNGG	3 cut(s)	480, 1255, 1272
Mva1269I	GAATGC	1 cut(s)	2108
MvaI	CCWGG	2 cut(s)	480, 1255
MvnI	CGCG	3 cut(s)	210, 1828, 2339
MwoI	GCNNNNNNNGC	3 cut(s)	608, 1161, 1829
NciI	CCSGG	1 cut(s)	1272
NcoI	CCATGG	2 cut(s)	335, 736
NdeI	CATATG	2 cut(s)	958, 1722
NmuCI	GTSAC	7 cut(s)	136, 821, 902, 1025, 1048, 1297, 1859
NspI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2362
NspV	TTCGAA	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	2297
PaeI	GCATGC	2 cut(s)	1241, 1597
PaeR7I	CTCGAG	1 cut(s)	2464
PagI	TCATGA	2 cut(s)	1876, 2232
PaqCI	CACCTGC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	602
PciI	ACATGT	1 cut(s)	2358
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	2108
PdmI	GAANNNNTTC	1 cut(s)	1181
PfeI	GAWTC	2 cut(s)	962, 2545
PflMI	CCANNNNNTGG	1 cut(s)	2389
PkrI	GCNGC	3 cut(s)	1822, 2170, 2569
PleI	GAGTC	9 cut(s)	68, 836, 859, 1055, 1317, 1463, 1764, 1856, 2479
PpsI	GAGTC	9 cut(s)	68, 836, 859, 1055, 1317, 1463, 1764, 1856, 2479
PscI	ACATGT	1 cut(s)	2358
Psp6I	CCWGG	2 cut(s)	478, 1253
PspGI	CCWGG	2 cut(s)	478, 1253
PspPI	GGNCC	5 cut(s)	202, 482, 1032, 1844, 2152
PspXI	VCTCGAGB	1 cut(s)	2464
PsuI	RGATCY	4 cut(s)	929, 940, 1687, 2068
RsaI	GTAC	2 cut(s)	523, 2396
RsaNI	GTAC	2 cut(s)	522, 2395
RseI	CAYNNNNRTG	5 cut(s)	590, 1287, 1751, 1803, 2297
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	4 cut(s)	24, 710, 1308, 2436
SatI	GCNGC	3 cut(s)	1821, 2169, 2568
Sau96I	GGNCC	5 cut(s)	202, 482, 1032, 1844, 2152
SchI	GAGTC	9 cut(s)	68, 836, 859, 1056, 1317, 1464, 1765, 1856, 2480
ScrFI	CCNGG	3 cut(s)	480, 1255, 1272
SduI	GDGCHC	3 cut(s)	402, 613, 692
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	4 cut(s)	327, 538, 688, 1832
SfcI	CTRYAG	2 cut(s)	604, 714
Sfr274I	CTCGAG	1 cut(s)	2464
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	4 cut(s)	202, 482, 1844, 2152
SlaI	CTCGAG	1 cut(s)	2464
SmiMI	CAYNNNNRTG	5 cut(s)	590, 1287, 1751, 1803, 2297
SmlI	CTYRAG	3 cut(s)	1195, 1481, 2464
SmoI	CTYRAG	3 cut(s)	1195, 1481, 2464
SpeI	ACTAGT	1 cut(s)	2402
SphI	GCATGC	2 cut(s)	1241, 1597
SseBI	AGGCCT	1 cut(s)	602
SsiI	CCGC	2 cut(s)	1828, 1995
SspMI	CTAG	4 cut(s)	644, 1590, 2403, 2418
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	478, 1253, 1270
StyI	CCWWGG	9 cut(s)	285, 335, 736, 773, 856, 990, 1621, 2053, 2552
TaaI	ACNGT	6 cut(s)	658, 715, 821, 1961, 2193, 2369
TaiI	ACGT	1 cut(s)	1470
TaqI	TCGA	6 cut(s)	34, 72, 1326, 1334, 2283, 2465
TatI	WGTACW	1 cut(s)	2394
TfiI	GAWTC	2 cut(s)	962, 2545
Tru1I	TTAA	4 cut(s)	24, 710, 1308, 2436
Tru9I	TTAA	4 cut(s)	24, 710, 1308, 2436
TscAI	CASTG	7 cut(s)	117, 826, 1057, 1138, 1306, 2133, 2374
TseFI	GTSAC	7 cut(s)	136, 821, 902, 1025, 1048, 1297, 1859
TseI	GCWGC	3 cut(s)	1820, 2168, 2567
Tsp45I	GTSAC	7 cut(s)	136, 821, 902, 1025, 1048, 1297, 1859
TspGWI	ACGGA	2 cut(s)	1518, 1661
TspRI	CASTG	7 cut(s)	117, 826, 1057, 1138, 1306, 2133, 2374
Van91I	CCANNNNNTGG	1 cut(s)	2389
VneI	GTGCAC	1 cut(s)	688
VpaK11BI	GGWCC	4 cut(s)	202, 482, 1844, 2152
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	6 cut(s)	37, 458, 749, 2004, 2333, 2482
XceI	RCATGY	5 cut(s)	1241, 1597, 1750, 2135, 2362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2386
XhoI	CTCGAG	1 cut(s)	2464
XmiI	GTMKAC	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	1181
XspI	CTAG	4 cut(s)	644, 1590, 2403, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.