Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Reverse (-)

83401894 .. 83403472

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTATTCCAGTGATTGATCTGAATCAATTTCCAGACTCTGAAGAGTACAAAAAACTGAGGGAAGCATCAGAGGAATGGGGTTGCTTCAGGCTAGTCAACCACAAGATCCCATTGACTCTGATGTCAGAGATGAAGATGGTGGTCAGATCTCTTCTTGATCTCCCCATGGAGATTAAGAAGAAGAACACTGATGTCATAGCTGGCAGTGGCTACATGGCACCTAGCAAGGTCAACCCTCTCTATGAGTCTTTGGGTCTCTATGACTTCGGATCATCTCAGGCTGTGCAGACCTTTTGCTCTCAGTTGGATGCTTCTTCCTACCAGAGAGAGGTGATAGAGAAGTACGCAGGAGCAATTTATGAGCAGATAGTGGATATAGGGCATAAGTTGGCAGAGAGTCTCGGTTTGAAGACTGGTTTCCTTAATGGGTGGCCTTGCCAGTTTAGGATAAACAAGTATAATTTCACTCCTGAATCCGTTGGATCTTGCGGAGTTCAGATGCACACAGATTCGAGTTTTCTGACAATTCTTCAAGATGATGAAAATGTTGGAGGTCTTGAAGTGATGAGCAAGTCTGGTGCTTTTGTACCAGTTGATCCGTGTCCAGGCACTCTCGTTGTCAATCTTGGAGACATTGCTAAGGCTTGGAGCAATGGGAGGCTGTGCAATTTGAAGCACAGAGTCCAATGCAGGGAGGCCACCATTCGAGTCTCCATTGCTACCTTTCTGTTGGGACCAAAGGAGGCAGCATTGGAAGCTCCTCCAGAATTTGTTGATTCGGAGCATCCACGTCTCTATGTCCCTTTCACTTATGATGACTTCAGAAAGCTCAGAGTCACCAAAAAATTGCAGGCTGGTGAAGCTCTAGAACTTGTGCGCATCGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

297

Amino Acids

33.15

Weight (kDa)

5.52

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	3 - 74	1.1e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	147 - 244	6.7e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
Acc16I	TGCGCA	1 cut(s)	881
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	1 cut(s)	492
AclWI	GGATC	4 cut(s)	103, 280, 493, 593
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	3 cut(s)	63, 73, 808
AfaI	GTAC	3 cut(s)	50, 347, 591
AfiI	CCNNNNNNNGG	3 cut(s)	331, 608, 694
AgsI	TTSAA	4 cut(s)	412, 536, 563, 676
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	4 cut(s)	203, 761, 832, 866
AluI	AGCT	4 cut(s)	203, 761, 832, 866
Alw26I	GTCTC	5 cut(s)	263, 407, 627, 718, 800
AlwI	GGATC	4 cut(s)	103, 280, 493, 593
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	434, 699
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	346, 832, 872
AvaII	GGWCC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	761
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	609
BcoDI	GTCTC	5 cut(s)	263, 407, 627, 718, 800
BfaI	CTAG	3 cut(s)	95, 225, 869
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	750
BlsI	GCNGC	1 cut(s)	751
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	737
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	222, 738
BmrFI	CCNGG	1 cut(s)	609
BmsI	GCATC	4 cut(s)	77, 301, 492, 796
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 608, 694
Bse1I	ACTGG	4 cut(s)	11, 421, 442, 593
Bse3DI	GCAATG	3 cut(s)	636, 661, 717
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	316, 787
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	331, 608, 694
BseMI	GCAATG	3 cut(s)	636, 661, 717
BseMII	CTCAG	4 cut(s)	50, 293, 317, 847
BseNI	ACTGG	4 cut(s)	11, 421, 442, 593
BseRI	GAGGAG	1 cut(s)	753
BseXI	GCAGC	1 cut(s)	761
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	436, 701
BshNI	GGYRCC	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	750, 788
BslI	CCNNNNNNNGG	3 cut(s)	331, 608, 694
BsmAI	GTCTC	5 cut(s)	263, 407, 627, 718, 800
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	750, 788
BsnI	GGCC	2 cut(s)	436, 701
Bso31I	GGTCTC	1 cut(s)	263
Bsp143I	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	436, 701
BspCNI	CTCAG	4 cut(s)	51, 292, 316, 846
BspLI	GGNNCC	2 cut(s)	222, 738
BspPI	GGATC	4 cut(s)	103, 280, 493, 593
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	636, 661, 717
BsrI	ACTGG	4 cut(s)	11, 421, 442, 593
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	39, 159
BstC8I	GCNNGC	2 cut(s)	205, 855
BstDEI	CTNAG	5 cut(s)	59, 279, 303, 642, 833
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	316, 787
BstHHI	GCGC	1 cut(s)	882
BstKTI	GATC	7 cut(s)	22, 111, 152, 163, 275, 488, 601
BstMAI	GTCTC	5 cut(s)	263, 407, 627, 718, 800
BstMBI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 863
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	761
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	3 cut(s)	108, 149, 485
BstYI	RGATCY	3 cut(s)	108, 149, 485
BsuRI	GGCC	2 cut(s)	436, 701
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	2 cut(s)	316, 787
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	3 cut(s)	18, 189, 214
Cac8I	GCNNGC	2 cut(s)	205, 855
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	882
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	49, 346, 590
CviAII	CATG	2 cut(s)	169, 217
CviQI	GTAC	3 cut(s)	49, 346, 590
DdeI	CTNAG	5 cut(s)	59, 279, 303, 642, 833
DpnI	GATC	7 cut(s)	21, 110, 151, 162, 274, 487, 600
DpnII	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	39, 159
EarI	CTCTTC	2 cut(s)	39, 159
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	3 cut(s)	63, 73, 808
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	2 cut(s)	172, 220
FaqI	GGGAC	2 cut(s)	750, 788
FatI	CATG	2 cut(s)	168, 216
Fnu4HI	GCNGC	1 cut(s)	750
FokI	GGATG	2 cut(s)	323, 774
Fsp4HI	GCNGC	1 cut(s)	750
FspAI	RTGCGCAY	1 cut(s)	881
FspBI	CTAG	3 cut(s)	95, 225, 869
FspI	TGCGCA	1 cut(s)	881
GlaI	GCGC	1 cut(s)	881
GluI	GCNGC	1 cut(s)	750
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	436, 701
HhaI	GCGC	1 cut(s)	882
Hin1II	CATG	2 cut(s)	172, 220
Hin6I	GCGC	1 cut(s)	880
HinP1I	GCGC	1 cut(s)	880
HincII	GTYRAC	2 cut(s)	100, 235
HindII	GTYRAC	2 cut(s)	100, 235
HphI	GGTGA	3 cut(s)	346, 832, 872
Hpy166II	GTNNAC	2 cut(s)	100, 235
Hpy188III	TCNNGA	7 cut(s)	35, 158, 473, 536, 560, 767, 869
Hpy8I	GTNNAC	2 cut(s)	100, 235
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	5 cut(s)	289, 505, 669, 693, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 863
HpyF3I	CTNAG	5 cut(s)	59, 279, 303, 642, 833
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	2 cut(s)	172, 220
HspAI	GCGC	1 cut(s)	880
Kzo9I	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
LmnI	GCTCC	4 cut(s)	353, 651, 766, 784
Lsp1109I	GCAGC	1 cut(s)	761
LweI	GCATC	4 cut(s)	77, 301, 492, 796
MaeI	CTAG	3 cut(s)	95, 225, 869
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	7 cut(s)	21, 110, 151, 162, 274, 487, 600
MboI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
MboII	GAAGA	8 cut(s)	56, 146, 148, 193, 196, 309, 424, 524
MflI	RGATCY	3 cut(s)	108, 149, 485
MluCI	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
MlyI	GAGTC	7 cut(s)	32, 112, 257, 409, 693, 720, 846
MmeI	TCCRAC	3 cut(s)	288, 463, 532
MnlI	CCTC	9 cut(s)	54, 67, 249, 325, 548, 654, 691, 739, 774
MseI	TTAA	3 cut(s)	177, 426, 892
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	758, 863
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
NlaIII	CATG	2 cut(s)	172, 220
NlaIV	GGNNCC	2 cut(s)	222, 738
NmuCI	GTSAC	1 cut(s)	838
NsbI	TGCGCA	1 cut(s)	881
PfeI	GAWTC	4 cut(s)	25, 476, 512, 779
PkrI	GCNGC	1 cut(s)	751
PleI	GAGTC	7 cut(s)	32, 112, 256, 408, 692, 719, 845
PpsI	GAGTC	7 cut(s)	32, 112, 256, 408, 692, 719, 845
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	222, 738
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	41
PsuI	RGATCY	3 cut(s)	108, 149, 485
RsaI	GTAC	3 cut(s)	50, 347, 591
RsaNI	GTAC	3 cut(s)	49, 346, 590
SaqAI	TTAA	3 cut(s)	177, 426, 892
SatI	GCNGC	1 cut(s)	750
Sau3AI	GATC	7 cut(s)	19, 108, 149, 160, 272, 485, 598
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	7 cut(s)	32, 112, 257, 409, 693, 720, 846
ScrFI	CCNGG	1 cut(s)	609
SfaNI	GCATC	4 cut(s)	77, 301, 492, 796
SinI	GGWCC	1 cut(s)	737
Sse9I	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	3 cut(s)	95, 225, 869
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	3 cut(s)	515, 709, 885
TasI	AATT	7 cut(s)	29, 357, 463, 528, 670, 770, 848
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	25, 476, 512, 779
Tru1I	TTAA	3 cut(s)	177, 426, 892
Tru9I	TTAA	3 cut(s)	177, 426, 892
TscAI	CASTG	3 cut(s)	18, 196, 214
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	1 cut(s)	749
Tsp45I	GTSAC	1 cut(s)	838
TspDTI	ATGAA	2 cut(s)	149, 558
TspGWI	ACGGA	2 cut(s)	469, 591
TspRI	CASTG	3 cut(s)	18, 196, 214
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	770
XbaI	TCTAGA	1 cut(s)	868
XspI	CTAG	3 cut(s)	95, 225, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.