Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001370

Physical Location & Seq

Genomic Coordinates Forward (+)

28031680 .. 28033211

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGAGATGGTGAGCGCTGTACGACCGTCCCACTGATTGATCTGAACCAGTTTCCAGATGCACAAGCGTACAAGAAACTGAGGGAAGCGTCTGAGACATGGGGTTGCTTCAGACTTGTCAACCATAAGATCCCACTGAGTCTGATGGCAGAGATGAAGGCTGTGGTCAGATGTTTCCTTGACCTGCCCATGGAGATGAAGATGCAGAACAAAGATGTCATTGCTGGCAGTGGCTACGTGGCACCCAGCAAAGCCAACCCTCTCTATGAGGCTCTGGGTCTTTATGACTTGGGCTCATCTCAGGCTGTGCATAGCTTTTGCTCTCAGTTGGATGCTTCTTCCCACCAGAGAGAGGTGATGGAGAAGTATGCTCAAGCAGTGTATGAGCAGTGTGTGGATATAGGGCGCAAGTTGGCAGAGAGTTATGGACTGGTTGATAGTGATTTTCACAAGGGCTGGCCCTGCCAGTTTAGGATAAACAAGTACAACTACACCCCTGAATCAGTGGGCTCTTCTGGTGTACAACTACACACAGATTCAGGATTTCTAACCATTCTTCAAGACGATGAAAACGTTGGTGGTCTAGAAGTGATGGACAAGTCTGGTGCTTTTGTAGCAGTTGATCCTTACCCAGGCACTCTCCTTATCAATTTTGGGGATGTTGCTCAGGCATGGAGCAATGGGAGGTTGTGCAATGTGAAGCATAGGGTACAATGCAGGCAGGCAACTATTCGAGTTTCGATTGCTACATTTCTCTTGGGACCCAAGGAAGAAGCAGTTGAAGCTCTTCCAGAATTTGTGGATTCAGGGCACCCTCGACTCTATGTCCCTTTTACTTATGAAGATTATAGAAAGCTTAGACTATCCACAAAAATGAGAGCTGGTGAGGCCCTTGAACTCCTACGCACCCCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009850 GO:0009852 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

306

Amino Acids

34.02

Weight (kDa)

5.7

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 81	4.4e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	156 - 252	8.6e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14120 AT1G14120 AT1G14120 AT1G14130
fragaria_vesca	FvH4_1g09830 FvH4_4g14690 FvH4_5g26050
malus_domestica	MD02G1106500.v1.1 MD02G1107000.v1.1 MD05G1342700.v1.1 MD10G1316500.v1.1 MD15G1226200.v1.1 MD15G1226300.v1.1
prunus_persica	Prupe.7G188800_v2.0.a1
pyrus_communis	pycom02g08450 pycom02g08500 pycom02g08590 pycom10g26850 pycom10g26880 pycom15g20120
rosa_chinensis	RchiOBHm_Chr2g0096111 RchiOBHm_Chr2g0096611 RchiOBHm_Chr6g0310881
rosa_laevigata	RLG00000010454 RLG00000012686 RLG00000016626 RLG00000016655
rosa_multiflora	Rmu_co8407901.1_g000001 Rmu_sc0003565.1_g000008 Rmu_sc0005996.1_g000007 Rmu_ssc0000395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00145480 Rroxscaffold_2G00145740 Rroxscaffold_7G00158220
rosa_rugosa	Rorug02G0057300 Rorug02G0058900 Rorug06G0169900 Rorug06G0383800
rosa_samantha	Rh2AG104100 Rh2AG106300 Rh2BG106200 Rh2BG108700 Rh2CG108100 Rh2CG110400 Rh2DG106800 Rh2DG110000 Rh6AG497500 Rh6BG507600 Rh6CG513600 Rh6DG500200
rosa_wichuraiana	Rw2G008000 Rw2G008230 Rw6G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	192
AccB1I	GGYRCC	2 cut(s)	241, 810
AclI	AACGTT	1 cut(s)	573
AclWI	GGATC	2 cut(s)	124, 617
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	5 cut(s)	22, 71, 485, 522, 711
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	3 cut(s)	190, 352, 632
AgsI	TTSAA	3 cut(s)	560, 782, 896
AhdI	GACNNNNNGTC	1 cut(s)	824
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	4 cut(s)	315, 785, 856, 881
AluI	AGCT	4 cut(s)	315, 785, 856, 881
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	124, 617
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	458, 888
ApoI	RAATTY	1 cut(s)	794
Asp700I	GAANNNNTTC	1 cut(s)	786
AspLEI	GCGC	2 cut(s)	18, 408
AspS9I	GGNCC	3 cut(s)	459, 761, 889
AsuHPI	GGTGA	3 cut(s)	23, 367, 896
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	813
BanI	GGYRCC	2 cut(s)	241, 810
BanII	GRGCYC	2 cut(s)	296, 512
BccI	CCATC	4 cut(s)	2, 139, 352, 586
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	584
BfoI	RGCGCY	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	192
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	1 cut(s)	761
BmeRI	GACNNNNNGTC	1 cut(s)	824
BmgT120I	GGNCC	3 cut(s)	459, 761, 889
BmiI	GGNNCC	4 cut(s)	243, 762, 763, 812
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	49, 192, 322
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	189, 631, 765
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 352, 632
Bse1I	ACTGG	3 cut(s)	49, 435, 466
Bse3DI	GCAATG	3 cut(s)	219, 685, 700
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	3 cut(s)	189, 631, 765
BseGI	GGATG	3 cut(s)	337, 664, 911
BseLI	CCNNNNNNNGG	3 cut(s)	190, 352, 632
BseMI	GCAATG	3 cut(s)	219, 685, 700
BseMII	CTCAG	6 cut(s)	71, 84, 128, 314, 338, 680
BseNI	ACTGG	3 cut(s)	49, 435, 466
BseSI	GKGCMC	1 cut(s)	813
BseYI	CCCAGC	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	460, 890
BshNI	GGYRCC	2 cut(s)	241, 810
BsiEI	CGRYCG	1 cut(s)	27
BslFI	GGGAC	3 cut(s)	14, 774, 812
BslI	CCNNNNNNNGG	3 cut(s)	190, 352, 632
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	3 cut(s)	14, 774, 812
BsnI	GGCC	2 cut(s)	460, 890
Bsp1286I	GDGCHC	3 cut(s)	296, 512, 813
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	40, 129, 622
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	2 cut(s)	460, 890
BspCNI	CTCAG	6 cut(s)	72, 85, 129, 313, 337, 679
BspLI	GGNNCC	4 cut(s)	243, 762, 763, 812
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	124, 617
BspQI	GCTCTTC	2 cut(s)	517, 792
BspT107I	GGYRCC	2 cut(s)	241, 810
BsrDI	GCAATG	3 cut(s)	219, 685, 700
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	49, 435, 466
BssECI	CCNNGG	3 cut(s)	189, 631, 765
BssMI	GATC	3 cut(s)	40, 129, 622
BssT1I	CCWWGG	2 cut(s)	189, 765
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	517, 792
BstAUI	TGTACA	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	226, 458, 719, 723
BstDEI	CTNAG	7 cut(s)	80, 93, 137, 300, 324, 666, 857
BstDSI	CCRYGG	1 cut(s)	189
BstENI	CCTNNNNNAGG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	337, 664, 911
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	2 cut(s)	18, 408
BstKTI	GATC	3 cut(s)	43, 132, 625
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	40, 129, 622
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	4 cut(s)	462, 614, 782, 887
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSLI	GKGCMC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	460, 890
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	337, 664, 911
BtsI	GCAGTG	3 cut(s)	235, 384, 395
BtsIMutI	CAGTG	6 cut(s)	32, 134, 235, 384, 395, 510
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	4 cut(s)	226, 458, 719, 723
CfoI	GCGC	2 cut(s)	18, 408
Cfr13I	GGNCC	3 cut(s)	459, 761, 889
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	21, 70, 484, 521, 710
CviAII	CATG	3 cut(s)	99, 190, 672
CviQI	GTAC	5 cut(s)	21, 70, 484, 521, 710
DdeI	CTNAG	7 cut(s)	80, 93, 137, 300, 324, 666, 857
DpnI	GATC	3 cut(s)	42, 131, 624
DpnII	GATC	3 cut(s)	40, 129, 622
DriI	GACNNNNNGTC	1 cut(s)	824
Eam1104I	CTCTTC	2 cut(s)	517, 792
Eam1105I	GACNNNNNGTC	1 cut(s)	824
EarI	CTCTTC	2 cut(s)	517, 792
Eco130I	CCWWGG	2 cut(s)	189, 765
Eco24I	GRGCYC	2 cut(s)	296, 512
Eco47I	GGWCC	1 cut(s)	761
Eco47III	AGCGCT	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	630
EcoO109I	RGGNCCY	2 cut(s)	761, 889
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	189, 765
EcoT38I	GRGCYC	2 cut(s)	296, 512
ErhI	CCWWGG	2 cut(s)	189, 765
FaeI	CATG	3 cut(s)	102, 193, 675
FaqI	GGGAC	3 cut(s)	14, 774, 812
FatI	CATG	3 cut(s)	98, 189, 671
FokI	GGATG	3 cut(s)	344, 671, 898
FriOI	GRGCYC	2 cut(s)	296, 512
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	2 cut(s)	17, 407
GsaI	CCCAGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	460, 890
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	18, 408
Hin1II	CATG	3 cut(s)	102, 193, 675
Hin6I	GCGC	2 cut(s)	16, 406
HinP1I	GCGC	2 cut(s)	16, 406
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	5 cut(s)	139, 500, 536, 803, 819
HphI	GGTGA	3 cut(s)	23, 367, 896
Hpy166II	GTNNAC	2 cut(s)	121, 521
Hpy188I	TCNGA	5 cut(s)	45, 94, 113, 144, 170
Hpy188III	TCNNGA	5 cut(s)	56, 540, 560, 584, 791
Hpy8I	GTNNAC	2 cut(s)	121, 521
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	237, 573
HpyCH4V	TGCA	5 cut(s)	62, 205, 310, 693, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	462, 614, 782, 887
HpyF3I	CTNAG	7 cut(s)	80, 93, 137, 300, 324, 666, 857
HpySE526I	ACGT	2 cut(s)	237, 573
Hsp92II	CATG	3 cut(s)	102, 193, 675
HspAI	GCGC	2 cut(s)	16, 406
KflI	GGGWCCC	1 cut(s)	761
Kzo9I	GATC	3 cut(s)	40, 129, 622
LguI	GCTCTTC	2 cut(s)	517, 792
LmnI	GCTCC	1 cut(s)	675
LweI	GCATC	3 cut(s)	49, 192, 322
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	2 cut(s)	237, 573
MalI	GATC	3 cut(s)	42, 131, 624
MboI	GATC	3 cut(s)	40, 129, 622
MboII	GAAGA	7 cut(s)	211, 330, 504, 548, 779, 782, 854
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	3 cut(s)	296, 512, 813
MluCI	AATT	2 cut(s)	649, 794
MlyI	GAGTC	2 cut(s)	148, 813
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	7 cut(s)	75, 262, 270, 346, 678, 825, 880
MroXI	GAANNNNTTC	1 cut(s)	786
MslI	CAYNNNNRTG	2 cut(s)	194, 872
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	462, 614, 782, 887
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	40, 129, 622
NlaIII	CATG	3 cut(s)	102, 193, 675
NlaIV	GGNNCC	4 cut(s)	243, 762, 763, 812
PciSI	GCTCTTC	2 cut(s)	517, 792
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	500, 536, 803
PleI	GAGTC	2 cut(s)	147, 813
PpsI	GAGTC	2 cut(s)	147, 813
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	761
Psp1406I	AACGTT	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	243, 762, 763, 812
PspPI	GGNCC	3 cut(s)	459, 761, 889
PspPPI	RGGWCCY	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	5 cut(s)	22, 71, 485, 522, 711
RsaNI	GTAC	5 cut(s)	21, 70, 484, 521, 710
RseI	CAYNNNNRTG	2 cut(s)	194, 872
SapI	GCTCTTC	2 cut(s)	517, 792
Sau3AI	GATC	3 cut(s)	40, 129, 622
Sau96I	GGNCC	3 cut(s)	459, 761, 889
SchI	GAGTC	2 cut(s)	148, 813
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	3 cut(s)	296, 512, 813
SetI	ASST	9 cut(s)	186, 240, 317, 357, 576, 689, 787, 858, 883
SfaNI	GCATC	3 cut(s)	49, 192, 322
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	2 cut(s)	194, 872
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	649, 794
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	189, 765
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	240, 576
TaqI	TCGA	3 cut(s)	733, 740, 817
TasI	AATT	2 cut(s)	649, 794
TatI	WGTACW	2 cut(s)	483, 520
TfiI	GAWTC	3 cut(s)	500, 536, 803
TscAI	CASTG	6 cut(s)	39, 141, 235, 384, 395, 510
TspDTI	ATGAA	4 cut(s)	170, 212, 582, 855
TspRI	CASTG	6 cut(s)	39, 141, 235, 384, 395, 510
VpaK11BI	GGWCC	1 cut(s)	761
XagI	CCTNNNNNAGG	1 cut(s)	630
XapI	RAATTY	1 cut(s)	794
XbaI	TCTAGA	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.