golgin-97, RanBP2alpha,Imh1p and p230/golgin-245
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G66030 AT5G66030 AT5G66030 AT5G66030 |
| fragaria_vesca | FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 |
| malus_domestica | MD02G1119300.v1.1 MD15G1233300.v1.1 |
| prunus_persica | Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1 |
| pyrus_communis | pycom02g09300 pycom05g12530 pycom15g20780 |
| rosa_chinensis | RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501 |
| rosa_laevigata | RLG00000007707 RLG00000016726 |
| rosa_multiflora | Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00144680 Rroxscaffold_4G00289770 |
| rosa_rugosa | Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700 |
| rosa_samantha | Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300 |
| rosa_wichuraiana | Rw2G008900 Rw2G019040 Rw3G021420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1554, 1947 |
| AccI | GTMKAC | 1 cut(s) | 1634 |
| AccII | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| AccIII | TCCGGA | 1 cut(s) | 2290 |
| AclWI | GGATC | 5 cut(s) | 504, 864, 1536, 2293, 2377 |
| AcsI | RAATTY | 8 cut(s) | 10, 215, 227, 796, 949, 1364, 1866, 1978 |
| AcuI | CTGAAG | 6 cut(s) | 420, 431, 872, 918, 1517, 2349 |
| AfaI | GTAC | 3 cut(s) | 527, 1383, 1594 |
| AfeI | AGCGCT | 1 cut(s) | 2079 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1408, 2267 |
| AjnI | CCWGG | 4 cut(s) | 551, 695, 780, 1524 |
| Alw21I | GWGCWC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| Alw26I | GTCTC | 6 cut(s) | 25, 68, 98, 768, 1500, 1746 |
| AlwI | GGATC | 5 cut(s) | 504, 864, 1536, 2293, 2377 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2011, 2372 |
| Ama87I | CYCGRG | 1 cut(s) | 169 |
| Aor13HI | TCCGGA | 1 cut(s) | 2290 |
| Aor51HI | AGCGCT | 1 cut(s) | 2079 |
| ApoI | RAATTY | 8 cut(s) | 10, 215, 227, 796, 949, 1364, 1866, 1978 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 227, 252 |
| AspLEI | GCGC | 7 cut(s) | 126, 454, 1707, 1709, 2035, 2080, 2327 |
| AspS9I | GGNCC | 2 cut(s) | 457, 1828 |
| AsuHPI | GGTGA | 7 cut(s) | 214, 323, 541, 1097, 1130, 1640, 2252 |
| AsuII | TTCGAA | 1 cut(s) | 110 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaI | CYCGRG | 1 cut(s) | 169 |
| AvaII | GGWCC | 2 cut(s) | 457, 1828 |
| BanII | GRGCYC | 3 cut(s) | 213, 1732, 2052 |
| BauI | CACGAG | 1 cut(s) | 387 |
| BbsI | GAAGAC | 2 cut(s) | 1782, 2153 |
| Bbv12I | GWGCWC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| BbvCI | CCTCAGC | 1 cut(s) | 1990 |
| BccI | CCATC | 3 cut(s) | 193, 1060, 1653 |
| BciT130I | CCWGG | 4 cut(s) | 553, 697, 782, 1526 |
| BclI | TGATCA | 1 cut(s) | 184 |
| BcoDI | GTCTC | 6 cut(s) | 25, 68, 98, 768, 1500, 1746 |
| BfaI | CTAG | 6 cut(s) | 473, 1034, 1188, 1421, 1872, 2346 |
| BfmI | CTRYAG | 5 cut(s) | 1025, 1110, 1425, 2262, 2331 |
| BfoI | RGCGCY | 1 cut(s) | 2081 |
| BglII | AGATCT | 2 cut(s) | 145, 1417 |
| BlpI | GCTNAGC | 1 cut(s) | 363 |
| BmcAI | AGTACT | 1 cut(s) | 527 |
| Bme1390I | CCNGG | 4 cut(s) | 553, 697, 782, 1526 |
| Bme18I | GGWCC | 2 cut(s) | 457, 1828 |
| BmeT110I | CYCGRG | 1 cut(s) | 169 |
| BmgT120I | GGNCC | 2 cut(s) | 457, 1828 |
| BmiI | GGNNCC | 2 cut(s) | 276, 1829 |
| BmrFI | CCNGG | 4 cut(s) | 553, 697, 782, 1526 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BpiI | GAAGAC | 2 cut(s) | 1782, 2153 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 512, 544 |
| BpmI | CTGGAG | 4 cut(s) | 803, 1508, 1770, 2123 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1990 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 363 |
| Bpu14I | TTCGAA | 1 cut(s) | 110 |
| BpuEI | CTTGAG | 6 cut(s) | 389, 439, 632, 1478, 1649, 2374 |
| BsaAI | YACGTR | 1 cut(s) | 1385 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1416 |
| BsaI | GGTCTC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 5 cut(s) | 78, 116, 1080, 1335, 1596 |
| BsaWI | WCCGGW | 1 cut(s) | 2290 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1408, 2267 |
| Bse3DI | GCAATG | 3 cut(s) | 69, 145, 671 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1416 |
| BseAI | TCCGGA | 1 cut(s) | 2290 |
| BseBI | CCWGG | 4 cut(s) | 553, 697, 782, 1526 |
| BseDI | CCNNGG | 5 cut(s) | 78, 116, 1080, 1335, 1596 |
| BseGI | GGATG | 6 cut(s) | 874, 986, 1076, 1417, 1543, 1975 |
| BseJI | GATNNNNATC | 1 cut(s) | 1416 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1408, 2267 |
| BseMI | GCAATG | 3 cut(s) | 69, 145, 671 |
| BseMII | CTCAG | 9 cut(s) | 38, 377, 726, 1032, 1209, 1431, 1490, 2004, 2142 |
| BsePI | GCGCGC | 1 cut(s) | 1705 |
| BseRI | GAGGAG | 5 cut(s) | 116, 533, 1355, 1616, 2111 |
| BseYI | CCCAGC | 2 cut(s) | 1173, 2350 |
| BsgI | GTGCAG | 2 cut(s) | 215, 1272 |
| Bsh1236I | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| BsiHKAI | GWGCWC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| BsiHKCI | CYCGRG | 1 cut(s) | 169 |
| BsiSI | CCGG | 2 cut(s) | 337, 2291 |
| BslFI | GGGAC | 3 cut(s) | 1206, 1841, 2324 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1408, 2267 |
| BsmAI | GTCTC | 6 cut(s) | 25, 68, 98, 768, 1500, 1746 |
| BsmBI | CGTCTC | 3 cut(s) | 25, 1500, 1746 |
| BsmFI | GGGAC | 3 cut(s) | 1206, 1841, 2324 |
| BsmI | GAATGC | 1 cut(s) | 1305 |
| Bso31I | GGTCTC | 1 cut(s) | 68 |
| BsoBI | CYCGRG | 1 cut(s) | 169 |
| Bsp119I | TTCGAA | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| Bsp13I | TCCGGA | 1 cut(s) | 2290 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 363 |
| Bsp19I | CCATGG | 1 cut(s) | 1596 |
| Bsp68I | TCGCGA | 1 cut(s) | 627 |
| BspCNI | CTCAG | 9 cut(s) | 37, 376, 727, 1033, 1210, 1432, 1491, 2003, 2143 |
| BspEI | TCCGGA | 1 cut(s) | 2290 |
| BspFNI | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BspLI | GGNNCC | 2 cut(s) | 276, 1829 |
| BspMAI | CTGCAG | 4 cut(s) | 1029, 1114, 1429, 2335 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspPI | GGATC | 5 cut(s) | 504, 864, 1536, 2293, 2377 |
| BspQI | GCTCTTC | 2 cut(s) | 1803, 2040 |
| BspT104I | TTCGAA | 1 cut(s) | 110 |
| BspTNI | GGTCTC | 1 cut(s) | 68 |
| BsrDI | GCAATG | 3 cut(s) | 69, 145, 671 |
| BssECI | CCNNGG | 5 cut(s) | 78, 116, 1080, 1335, 1596 |
| BssHII | GCGCGC | 1 cut(s) | 1705 |
| BssSI | CACGAG | 1 cut(s) | 387 |
| BssT1I | CCWWGG | 2 cut(s) | 1335, 1596 |
| Bst2BI | CACGAG | 1 cut(s) | 387 |
| Bst2UI | CCWGG | 4 cut(s) | 553, 697, 782, 1526 |
| Bst4CI | ACNGT | 4 cut(s) | 1592, 1791, 1817, 2058 |
| Bst6I | CTCTTC | 7 cut(s) | 66, 315, 369, 1803, 2040, 2174, 2289 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 974, 1316, 2360 |
| BstBAI | YACGTR | 1 cut(s) | 1385 |
| BstBI | TTCGAA | 1 cut(s) | 110 |
| BstC8I | GCNNGC | 4 cut(s) | 474, 1134, 1707, 2052 |
| BstDSI | CCRYGG | 3 cut(s) | 116, 1080, 1596 |
| BstF5I | GGATG | 6 cut(s) | 874, 986, 1076, 1417, 1543, 1975 |
| BstFNI | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| BstH2I | RGCGCY | 1 cut(s) | 2081 |
| BstHHI | GCGC | 7 cut(s) | 126, 454, 1707, 1709, 2035, 2080, 2327 |
| BstMAI | GTCTC | 6 cut(s) | 25, 68, 98, 768, 1500, 1746 |
| BstNI | CCWGG | 4 cut(s) | 553, 697, 782, 1526 |
| BstNSI | RCATGY | 1 cut(s) | 1960 |
| BstSCI | CCNGG | 4 cut(s) | 551, 695, 780, 1524 |
| BstSFI | CTRYAG | 5 cut(s) | 1025, 1110, 1425, 2262, 2331 |
| BstUI | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| BstV2I | GAAGAC | 2 cut(s) | 1782, 2153 |
| BstX2I | RGATCY | 5 cut(s) | 145, 1417, 1528, 2298, 2369 |
| BstYI | RGATCY | 5 cut(s) | 145, 1417, 1528, 2298, 2369 |
| BtgI | CCRYGG | 3 cut(s) | 116, 1080, 1596 |
| BtgZI | GCGATG | 1 cut(s) | 189 |
| BtsCI | GGATG | 6 cut(s) | 874, 986, 1076, 1417, 1543, 1975 |
| BtsI | GCAGTG | 1 cut(s) | 1022 |
| BtsIMutI | CAGTG | 2 cut(s) | 716, 1022 |
| BtuMI | TCGCGA | 1 cut(s) | 627 |
| Cac8I | GCNNGC | 4 cut(s) | 474, 1134, 1707, 2052 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2011, 2372 |
| CciI | TCATGA | 1 cut(s) | 181 |
| CfoI | GCGC | 7 cut(s) | 126, 454, 1707, 1709, 2035, 2080, 2327 |
| Cfr13I | GGNCC | 2 cut(s) | 457, 1828 |
| Cfr42I | CCGCGG | 1 cut(s) | 119 |
| CseI | GACGC | 1 cut(s) | 722 |
| Csp6I | GTAC | 3 cut(s) | 526, 1382, 1593 |
| CviAII | CATG | 9 cut(s) | 182, 1148, 1154, 1391, 1597, 1668, 1701, 1957, 2164 |
| CviQI | GTAC | 3 cut(s) | 526, 1382, 1593 |
| Eam1104I | CTCTTC | 7 cut(s) | 66, 315, 369, 1803, 2040, 2174, 2289 |
| EarI | CTCTTC | 7 cut(s) | 66, 315, 369, 1803, 2040, 2174, 2289 |
| EciI | GGCGGA | 1 cut(s) | 355 |
| Ecl136II | GAGCTC | 3 cut(s) | 211, 1730, 2050 |
| Eco130I | CCWWGG | 2 cut(s) | 1335, 1596 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1732, 2052 |
| Eco31I | GGTCTC | 1 cut(s) | 68 |
| Eco47I | GGWCC | 2 cut(s) | 457, 1828 |
| Eco47III | AGCGCT | 1 cut(s) | 2079 |
| Eco53kI | GAGCTC | 3 cut(s) | 211, 1730, 2050 |
| Eco57I | CTGAAG | 6 cut(s) | 420, 431, 872, 918, 1517, 2349 |
| Eco88I | CYCGRG | 1 cut(s) | 169 |
| EcoICRI | GAGCTC | 3 cut(s) | 211, 1730, 2050 |
| EcoO109I | RGGNCCY | 2 cut(s) | 457, 1828 |
| EcoRI | GAATTC | 1 cut(s) | 227 |
| EcoRII | CCWGG | 4 cut(s) | 551, 695, 780, 1524 |
| EcoT14I | CCWWGG | 2 cut(s) | 1335, 1596 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1732, 2052 |
| ErhI | CCWWGG | 2 cut(s) | 1335, 1596 |
| Esp3I | CGTCTC | 3 cut(s) | 25, 1500, 1746 |
| FaeI | CATG | 9 cut(s) | 185, 1151, 1157, 1394, 1600, 1671, 1704, 1960, 2167 |
| FaqI | GGGAC | 3 cut(s) | 1206, 1841, 2324 |
| FatI | CATG | 9 cut(s) | 181, 1147, 1153, 1390, 1596, 1667, 1700, 1956, 2163 |
| FbaI | TGATCA | 1 cut(s) | 184 |
| FblI | GTMKAC | 1 cut(s) | 1634 |
| FokI | GGATG | 6 cut(s) | 881, 973, 1063, 1424, 1550, 1982 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1732, 2052 |
| FspBI | CTAG | 6 cut(s) | 473, 1034, 1188, 1421, 1872, 2346 |
| GlaI | GCGC | 7 cut(s) | 125, 453, 1706, 1708, 2034, 2079, 2326 |
| GsaI | CCCAGC | 2 cut(s) | 1177, 2354 |
| GsuI | CTGGAG | 4 cut(s) | 803, 1508, 1770, 2123 |
| HaeII | RGCGCY | 1 cut(s) | 2081 |
| HapII | CCGG | 2 cut(s) | 337, 2291 |
| HgaI | GACGC | 1 cut(s) | 722 |
| HhaI | GCGC | 7 cut(s) | 126, 454, 1707, 1709, 2035, 2080, 2327 |
| Hin1II | CATG | 9 cut(s) | 185, 1151, 1157, 1394, 1600, 1671, 1704, 1960, 2167 |
| Hin6I | GCGC | 7 cut(s) | 124, 452, 1705, 1707, 2033, 2078, 2325 |
| HinP1I | GCGC | 7 cut(s) | 124, 452, 1705, 1707, 2033, 2078, 2325 |
| HincII | GTYRAC | 2 cut(s) | 1678, 2312 |
| HindII | GTYRAC | 2 cut(s) | 1678, 2312 |
| HindIII | AAGCTT | 4 cut(s) | 912, 1612, 1625, 2225 |
| HpaI | GTTAAC | 1 cut(s) | 1678 |
| HpaII | CCGG | 2 cut(s) | 337, 2291 |
| HphI | GGTGA | 7 cut(s) | 214, 323, 541, 1097, 1130, 1640, 2252 |
| Hpy166II | GTNNAC | 4 cut(s) | 549, 1635, 1678, 2312 |
| Hpy8I | GTNNAC | 4 cut(s) | 549, 1635, 1678, 2312 |
| Hpy99I | CGWCG | 1 cut(s) | 716 |
| HpyAV | CCTTC | 8 cut(s) | 242, 284, 589, 847, 1402, 1798, 2180, 2288 |
| HpyCH4III | ACNGT | 4 cut(s) | 1592, 1791, 1817, 2058 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 1384 |
| HpySE526I | ACGT | 2 cut(s) | 18, 1384 |
| Hsp92II | CATG | 9 cut(s) | 185, 1151, 1157, 1394, 1600, 1671, 1704, 1960, 2167 |
| HspAI | GCGC | 7 cut(s) | 124, 452, 1705, 1707, 2033, 2078, 2325 |
| Kpn2I | TCCGGA | 1 cut(s) | 2290 |
| Ksp22I | TGATCA | 1 cut(s) | 184 |
| KspAI | GTTAAC | 1 cut(s) | 1678 |
| KspI | CCGCGG | 1 cut(s) | 119 |
| LguI | GCTCTTC | 2 cut(s) | 1803, 2040 |
| LmnI | GCTCC | 5 cut(s) | 208, 339, 2098, 2104, 2280 |
| MaeI | CTAG | 6 cut(s) | 473, 1034, 1188, 1421, 1872, 2346 |
| MaeII | ACGT | 2 cut(s) | 18, 1384 |
| MaeIII | GTNAC | 3 cut(s) | 202, 1447, 2058 |
| MflI | RGATCY | 5 cut(s) | 145, 1417, 1528, 2298, 2369 |
| MhlI | GDGCHC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| MlyI | GAGTC | 6 cut(s) | 359, 533, 1058, 1430, 1640, 1922 |
| MmeI | TCCRAC | 2 cut(s) | 16, 846 |
| MroI | TCCGGA | 1 cut(s) | 2290 |
| MroXI | GAANNNNTTC | 2 cut(s) | 227, 252 |
| MseI | TTAA | 8 cut(s) | 507, 749, 1356, 1587, 1677, 1724, 1982, 2222 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1152, 1955 |
| MspA1I | CMGCKG | 2 cut(s) | 118, 1270 |
| MspI | CCGG | 2 cut(s) | 337, 2291 |
| MspR9I | CCNGG | 4 cut(s) | 553, 697, 782, 1526 |
| Mva1269I | GAATGC | 1 cut(s) | 1305 |
| MvaI | CCWGG | 4 cut(s) | 553, 697, 782, 1526 |
| MvnI | CGCG | 6 cut(s) | 118, 126, 152, 627, 1707, 2325 |
| NcoI | CCATGG | 1 cut(s) | 1596 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 9 cut(s) | 185, 1151, 1157, 1394, 1600, 1671, 1704, 1960, 2167 |
| NlaIV | GGNNCC | 2 cut(s) | 276, 1829 |
| NmuCI | GTSAC | 2 cut(s) | 202, 2058 |
| NruI | TCGCGA | 1 cut(s) | 627 |
| NspI | RCATGY | 1 cut(s) | 1960 |
| NspV | TTCGAA | 1 cut(s) | 110 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PauI | GCGCGC | 1 cut(s) | 1705 |
| PciSI | GCTCTTC | 2 cut(s) | 1803, 2040 |
| PctI | GAATGC | 1 cut(s) | 1305 |
| PdmI | GAANNNNTTC | 2 cut(s) | 227, 252 |
| PfeI | GAWTC | 7 cut(s) | 314, 443, 1115, 1274, 1894, 2008, 2394 |
| PfoI | TCCNGGA | 1 cut(s) | 1524 |
| PleI | GAGTC | 6 cut(s) | 358, 533, 1057, 1430, 1639, 1921 |
| PpsI | GAGTC | 6 cut(s) | 358, 533, 1057, 1430, 1639, 1921 |
| Ppu21I | YACGTR | 1 cut(s) | 1385 |
| PpuMI | RGGWCCY | 2 cut(s) | 457, 1828 |
| PsiI | TTATAA | 2 cut(s) | 1554, 1947 |
| Psp124BI | GAGCTC | 3 cut(s) | 213, 1732, 2052 |
| Psp5II | RGGWCCY | 2 cut(s) | 457, 1828 |
| Psp6I | CCWGG | 4 cut(s) | 551, 695, 780, 1524 |
| PspFI | CCCAGC | 2 cut(s) | 1173, 2350 |
| PspGI | CCWGG | 4 cut(s) | 551, 695, 780, 1524 |
| PspN4I | GGNNCC | 2 cut(s) | 276, 1829 |
| PspPI | GGNCC | 2 cut(s) | 457, 1828 |
| PspPPI | RGGWCCY | 2 cut(s) | 457, 1828 |
| PstI | CTGCAG | 4 cut(s) | 1029, 1114, 1429, 2335 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2011, 2372 |
| PsuI | RGATCY | 5 cut(s) | 145, 1417, 1528, 2298, 2369 |
| PteI | GCGCGC | 1 cut(s) | 1705 |
| PvuII | CAGCTG | 1 cut(s) | 1270 |
| RruI | TCGCGA | 1 cut(s) | 627 |
| RsaI | GTAC | 3 cut(s) | 527, 1383, 1594 |
| RsaNI | GTAC | 3 cut(s) | 526, 1382, 1593 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1152, 1955 |
| SacI | GAGCTC | 3 cut(s) | 213, 1732, 2052 |
| SacII | CCGCGG | 1 cut(s) | 119 |
| SapI | GCTCTTC | 2 cut(s) | 1803, 2040 |
| SaqAI | TTAA | 8 cut(s) | 507, 749, 1356, 1587, 1677, 1724, 1982, 2222 |
| Sau96I | GGNCC | 2 cut(s) | 457, 1828 |
| ScaI | AGTACT | 1 cut(s) | 527 |
| SchI | GAGTC | 6 cut(s) | 359, 533, 1058, 1430, 1640, 1922 |
| ScrFI | CCNGG | 4 cut(s) | 553, 697, 782, 1526 |
| SduI | GDGCHC | 6 cut(s) | 213, 364, 1390, 1732, 1815, 2052 |
| SfcI | CTRYAG | 5 cut(s) | 1025, 1110, 1425, 2262, 2331 |
| Sfr303I | CCGCGG | 1 cut(s) | 119 |
| SfuI | TTCGAA | 1 cut(s) | 110 |
| SgrBI | CCGCGG | 1 cut(s) | 119 |
| SinI | GGWCC | 2 cut(s) | 457, 1828 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1152, 1955 |
| SmlI | CTYRAG | 6 cut(s) | 368, 418, 611, 1457, 1628, 2389 |
| SmoI | CTYRAG | 6 cut(s) | 368, 418, 611, 1457, 1628, 2389 |
| SspMI | CTAG | 6 cut(s) | 473, 1034, 1188, 1421, 1872, 2346 |
| SstI | GAGCTC | 3 cut(s) | 213, 1732, 2052 |
| StyD4I | CCNGG | 4 cut(s) | 551, 695, 780, 1524 |
| StyI | CCWWGG | 2 cut(s) | 1335, 1596 |
| TaaI | ACNGT | 4 cut(s) | 1592, 1791, 1817, 2058 |
| TaiI | ACGT | 2 cut(s) | 21, 1387 |
| TaqI | TCGA | 7 cut(s) | 110, 446, 537, 542, 619, 825, 1052 |
| TaqII | GACCGA | 1 cut(s) | 92 |
| TatI | WGTACW | 1 cut(s) | 525 |
| TauI | GCSGC | 7 cut(s) | 86, 89, 297, 300, 303, 306, 398 |
| TfiI | GAWTC | 7 cut(s) | 314, 443, 1115, 1274, 1894, 2008, 2394 |
| Tru1I | TTAA | 8 cut(s) | 507, 749, 1356, 1587, 1677, 1724, 1982, 2222 |
| Tru9I | TTAA | 8 cut(s) | 507, 749, 1356, 1587, 1677, 1724, 1982, 2222 |
| TscAI | CASTG | 2 cut(s) | 723, 1029 |
| TseFI | GTSAC | 2 cut(s) | 202, 2058 |
| Tsp45I | GTSAC | 2 cut(s) | 202, 2058 |
| TspDTI | ATGAA | 4 cut(s) | 651, 1809, 1889, 1899 |
| TspGWI | ACGGA | 2 cut(s) | 221, 1862 |
| TspRI | CASTG | 2 cut(s) | 723, 1029 |
| VpaK11BI | GGWCC | 2 cut(s) | 457, 1828 |
| XapI | RAATTY | 8 cut(s) | 10, 215, 227, 796, 949, 1364, 1866, 1978 |
| XbaI | TCTAGA | 1 cut(s) | 1871 |
| XceI | RCATGY | 1 cut(s) | 1960 |
| XmiI | GTMKAC | 1 cut(s) | 1634 |
| XmnI | GAANNNNTTC | 2 cut(s) | 227, 252 |
| XspI | CTAG | 6 cut(s) | 473, 1034, 1188, 1421, 1872, 2346 |
| ZrmI | AGTACT | 1 cut(s) | 527 |