Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

10137703 .. 10138440

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGCTCCTTCAGTTTAGTCCTGAAGAGATCCAGAAGTGTCAACAAGCATACCGCGCATCTGTAGATGTCCCTCCTAGCGCAGCAAGTGATGCTTCAGGATCTGCCACCTCCTCGCTTTTCTCAAGATTCTCATTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

46

Amino Acids

4.94

Weight (kDa)

4.78

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	22, 106
AcuI	CTGAAG	2 cut(s)	42, 78
AlwI	GGATC	2 cut(s)	22, 106
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	56, 80
BbvI	GCAGC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmsI	GCATC	2 cut(s)	65, 79
BpuEI	CTTGAG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	27, 98
BspACI	CCGC	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	2 cut(s)	22, 106
BssMI	GATC	2 cut(s)	27, 98
Bst6I	CTCTTC	1 cut(s)	18
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	56, 80
BstKTI	GATC	2 cut(s)	30, 101
BstMBI	GATC	2 cut(s)	27, 98
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 89
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	2 cut(s)	27, 98
BstYI	RGATCY	2 cut(s)	27, 98
CaiI	CAGNNNCTG	1 cut(s)	101
CfoI	GCGC	2 cut(s)	56, 80
DpnI	GATC	2 cut(s)	29, 100
DpnII	GATC	2 cut(s)	27, 98
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco57I	CTGAAG	2 cut(s)	42, 78
FaiI	YATR	1 cut(s)	49
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FaqI	GGGAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	55, 79
GluI	GCNGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	56, 80
Hin6I	GCGC	2 cut(s)	54, 78
HinP1I	GCGC	2 cut(s)	54, 78
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	4 cut(s)	20, 31, 96, 123
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 89
HspAI	GCGC	2 cut(s)	54, 78
Kzo9I	GATC	2 cut(s)	27, 98
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	3 cut(s)	33, 44, 81
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	65, 79
MaeI	CTAG	1 cut(s)	75
MalI	GATC	2 cut(s)	29, 100
MboI	GATC	2 cut(s)	27, 98
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	2 cut(s)	27, 98
MnlI	CCTC	3 cut(s)	81, 118, 121
MseI	TTAA	1 cut(s)	139
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	53, 89
NdeII	GATC	2 cut(s)	27, 98
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	2 cut(s)	27, 98
SaqAI	TTAA	1 cut(s)	139
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	27, 98
SetI	ASST	1 cut(s)	110
SfaNI	GCATC	2 cut(s)	65, 79
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	9 cut(s)	32, 43, 56, 65, 87, 96, 108, 124, 135
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	139
Tru9I	TTAA	1 cut(s)	139
TseI	GCWGC	1 cut(s)	80
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.