Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003151.1

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

42012 .. 42897

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003151.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggaggacaattcgaaaccgcagaggaacggaagcgacaataatagagatctcgcattggagaatggcagctcaggcgatgctcatgatcagcttgtgcagatggtcacgaagctcaaattccagaacgaattcctcaagtctcagattgaaggctttcagagtgtgcaaccagcaaaacccagtgaagccggtggttccgaagaggttgaacggctccggcagagcattgagtcattgaattcgcagcttgaggaagagaagcaaacacaagctgcggcagaaaaggctctgaagcaccttagagaagaacacttggaagctgattcaagagcgcaggacctctctgcaaagctagctgaagctcaacagaagttggatcaagaaattaaagagcgtgaagagaagtactctgatcttgactcgaaattcaccaggcttcacaaacgagcaaagcagcgtattcaagatgttcaaaaggaaaaagatgacattgaggctcgatttcgtgaagtaaatgaaagagctgagcgagcattatcccaacagtcagcattgcagcaagagcttgacaaaaccaggcaacaagcaaacgatgcactgaaagcaattgatgctgagagacaacaattaagaagtgcaaataataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

217

Amino Acids

24.88

Weight (kDa)

5.36

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 278
AclWI	GGATC	1 cut(s)	387
AcsI	RAATTY	4 cut(s)	119, 131, 241, 428
AcuI	CTGAAG	2 cut(s)	314, 381
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	6 cut(s)	152, 212, 241, 330, 467, 476
AjnI	CCWGG	2 cut(s)	434, 578
Alw26I	GTCTC	2 cut(s)	147, 616
AlwI	GGATC	1 cut(s)	387
ApeKI	GCWGC	5 cut(s)	69, 247, 275, 457, 559
ApoI	RAATTY	4 cut(s)	119, 131, 241, 428
Asp700I	GAANNNNTTC	2 cut(s)	131, 156
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	340
BbvI	GCAGC	5 cut(s)	81, 259, 262, 469, 571
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	436, 580
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	147, 616
BfaI	CTAG	1 cut(s)	356
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	6 cut(s)	70, 248, 276, 279, 458, 560
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	6 cut(s)	71, 249, 277, 280, 459, 561
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	436, 580
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	199, 218
BmrFI	CCNGG	2 cut(s)	436, 580
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	70, 586, 604
BmtI	GCTAGC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	528
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	122, 272
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	436, 580
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	4 cut(s)	87, 158, 519, 609
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	5 cut(s)	81, 259, 262, 469, 571
BsgI	GTGCAG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	192, 220
BsmAI	GTCTC	2 cut(s)	147, 616
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	49, 88, 379, 415
Bsp1720I	GCTNAGC	1 cut(s)	528
BspACI	CCGC	2 cut(s)	20, 278
BspCNI	CTCAG	4 cut(s)	86, 157, 520, 610
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	199, 218
BspOI	GCTAGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	387
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	191
BssMI	GATC	4 cut(s)	49, 88, 379, 415
Bst2UI	CCWGG	2 cut(s)	436, 580
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	3 cut(s)	198, 252, 396
BstAPI	GCANNNNNTGC	2 cut(s)	596, 614
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	357, 534
BstDEI	CTNAG	5 cut(s)	73, 144, 302, 528, 618
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	4 cut(s)	52, 91, 382, 418
BstMAI	GTCTC	2 cut(s)	147, 616
BstMBI	GATC	4 cut(s)	49, 88, 379, 415
BstMWI	GCNNNNNNNGC	8 cut(s)	75, 287, 356, 533, 565, 596, 605, 614
BstNI	CCWGG	2 cut(s)	436, 580
BstSCI	CCNGG	2 cut(s)	434, 578
BstV1I	GCAGC	5 cut(s)	81, 259, 262, 469, 571
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	190, 599
Cac8I	GCNNGC	2 cut(s)	357, 534
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	5 cut(s)	73, 144, 302, 528, 618
DpnI	GATC	4 cut(s)	51, 90, 381, 417
DpnII	GATC	4 cut(s)	49, 88, 379, 415
Eam1104I	CTCTTC	3 cut(s)	198, 252, 396
EarI	CTCTTC	3 cut(s)	198, 252, 396
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	314, 381
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRI	GAATTC	2 cut(s)	131, 241
EcoRII	CCWGG	2 cut(s)	434, 578
FaeI	CATG	1 cut(s)	89
FaiI	YATR	1 cut(s)	87
FatI	CATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	70, 248, 276, 279, 458, 560
Fsp4HI	GCNGC	6 cut(s)	70, 248, 276, 279, 458, 560
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	6 cut(s)	70, 248, 276, 279, 458, 560
HapII	CCGG	2 cut(s)	192, 220
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	3 cut(s)	233, 326, 422
HpaII	CCGG	2 cut(s)	192, 220
HphI	GGTGA	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	147, 162, 202, 294, 415
Hpy188III	TCNNGA	8 cut(s)	86, 109, 124, 330, 383, 419, 467, 509
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	6 cut(s)	100, 169, 350, 559, 599, 641
HpyF10VI	GCNNNNNNNGC	8 cut(s)	75, 287, 356, 533, 565, 596, 605, 614
HpyF3I	CTNAG	5 cut(s)	73, 144, 302, 528, 618
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	49, 88, 379, 415
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	5 cut(s)	81, 259, 262, 469, 571
LweI	GCATC	3 cut(s)	70, 586, 604
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	51, 90, 381, 417
MboI	GATC	4 cut(s)	49, 88, 379, 415
MboII	GAAGA	4 cut(s)	215, 269, 320, 413
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	1 cut(s)	49
MluCI	AATT	8 cut(s)	10, 119, 131, 241, 387, 428, 609, 629
MlyI	GAGTC	2 cut(s)	242, 416
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	6 cut(s)	18, 146, 199, 247, 353, 490
MroXI	GAANNNNTTC	2 cut(s)	131, 156
MseI	TTAA	2 cut(s)	390, 632
MspI	CCGG	2 cut(s)	192, 220
MspR9I	CCNGG	2 cut(s)	436, 580
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	2 cut(s)	436, 580
MwoI	GCNNNNNNNGC	8 cut(s)	75, 287, 356, 533, 565, 596, 605, 614
NdeII	GATC	4 cut(s)	49, 88, 379, 415
NheI	GCTAGC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	199, 218
NmuCI	GTSAC	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	1 cut(s)	85
PdmI	GAANNNNTTC	2 cut(s)	131, 156
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	6 cut(s)	71, 249, 277, 280, 459, 561
PleI	GAGTC	2 cut(s)	241, 416
PpsI	GAGTC	2 cut(s)	241, 416
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	434, 578
PspGI	CCWGG	2 cut(s)	434, 578
PspN4I	GGNNCC	2 cut(s)	199, 218
PspPI	GGNCC	1 cut(s)	340
PspPPI	RGGWCCY	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	390, 632
SatI	GCNGC	6 cut(s)	70, 248, 276, 279, 458, 560
Sau3AI	GATC	4 cut(s)	49, 88, 379, 415
Sau96I	GGNCC	1 cut(s)	340
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	242, 416
ScrFI	CCNGG	2 cut(s)	436, 580
SfaNI	GCATC	3 cut(s)	70, 586, 604
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	137, 251
SmoI	CTYRAG	2 cut(s)	137, 251
Sse9I	AATT	8 cut(s)	10, 119, 131, 241, 387, 428, 609, 629
SsiI	CCGC	2 cut(s)	20, 278
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	434, 578
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	14, 425, 502
TasI	AATT	8 cut(s)	10, 119, 131, 241, 387, 428, 609, 629
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	2 cut(s)	390, 632
Tru9I	TTAA	2 cut(s)	390, 632
TscAI	CASTG	2 cut(s)	190, 606
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	5 cut(s)	69, 247, 275, 457, 559
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	534
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	190, 606
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	4 cut(s)	119, 131, 241, 428
XmnI	GAANNNNTTC	2 cut(s)	131, 156
XspI	CTAG	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.