Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023972.1

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

784 .. 1874

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023972.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ctggagcatgaaaatcgtctgcatagccaacaggaaacaatgttgaagactgagcttcgcaacatggaaagatcacagaagagggaaggagtagatatgacttacctcaaaaatgttatattaaagcttcttgaaactggtgaagtggaggctctattacctgtggttggtatgctccttcagtttagtcctgaagagatccagaagtgtcaacaagcataccgcgcatctgtagatgtccctcctagcgcagcaagtgatgcttcaggatctgccacctcctcgcttttctcaagattctcattcacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

5.35

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	193, 277
AcuI	CTGAAG	3 cut(s)	164, 213, 249
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	46, 134
AluBI	AGCT	2 cut(s)	55, 127
AluI	AGCT	2 cut(s)	55, 127
AlwI	GGATC	2 cut(s)	193, 277
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	227, 251
AsuHPI	GGTGA	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmsI	GCATC	2 cut(s)	236, 250
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	71, 198, 269
BspACI	CCGC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	193, 277
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	3 cut(s)	71, 198, 269
Bst6I	CTCTTC	2 cut(s)	74, 189
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	227, 251
BstKTI	GATC	3 cut(s)	74, 201, 272
BstMBI	GATC	3 cut(s)	71, 198, 269
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 260
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	198, 269
BstYI	RGATCY	2 cut(s)	198, 269
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	2 cut(s)	227, 251
CviAII	CATG	2 cut(s)	8, 64
CviJI	RGCY	4 cut(s)	27, 55, 127, 152
CviKI_1	RGCY	4 cut(s)	27, 55, 127, 152
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	73, 200, 271
DpnII	GATC	3 cut(s)	71, 198, 269
Eam1104I	CTCTTC	2 cut(s)	74, 189
EarI	CTCTTC	2 cut(s)	74, 189
Eco57I	CTGAAG	3 cut(s)	164, 213, 249
FaeI	CATG	2 cut(s)	11, 67
FaiI	YATR	7 cut(s)	9, 24, 65, 98, 119, 173, 220
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	7, 63
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	226, 250
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	227, 251
Hin1II	CATG	2 cut(s)	11, 67
Hin6I	GCGC	2 cut(s)	225, 249
HinP1I	GCGC	2 cut(s)	225, 249
HincII	GTYRAC	1 cut(s)	212
HindII	GTYRAC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	297
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188III	TCNNGA	5 cut(s)	131, 191, 202, 267, 294
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	80, 188
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 260
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	11, 67
HspAI	GCGC	2 cut(s)	225, 249
Kzo9I	GATC	3 cut(s)	71, 198, 269
LmnI	GCTCC	2 cut(s)	4, 180
LpnPI	CCDG	6 cut(s)	17, 123, 174, 204, 215, 252
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	236, 250
MaeI	CTAG	1 cut(s)	246
MalI	GATC	3 cut(s)	73, 200, 271
MboI	GATC	3 cut(s)	71, 198, 269
MboII	GAAGA	3 cut(s)	58, 91, 206
MflI	RGATCY	2 cut(s)	198, 269
MnlI	CCTC	6 cut(s)	75, 116, 142, 252, 289, 292
MseI	TTAA	2 cut(s)	122, 310
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	224, 260
NdeII	GATC	3 cut(s)	71, 198, 269
NlaIII	CATG	2 cut(s)	11, 67
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	198, 269
SaqAI	TTAA	2 cut(s)	122, 310
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	71, 198, 269
SetI	ASST	5 cut(s)	57, 108, 129, 163, 281
SfaNI	GCATC	2 cut(s)	236, 250
SfcI	CTRYAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	122, 310
Tru9I	TTAA	2 cut(s)	122, 310
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	24
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.