Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

25852494 .. 25857422

Gene Structure 4929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGACAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTATGCAAATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTGTGCAACCAGCAGAACCGAGTGAAGCCGGTGGTTCTGAAGAGGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCATTGCAACCGATAGCACTGCAACATACAATTTCGGAGAAGGATCAGGTGGCGAGATCCAGGTTAGATCAATGGATCCGATCTGGGGAGGCTTCCGATCTGAGCAGGATAGGGCGTGATTTGGATTTAATTTGGTGGCGTGAACTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

220

Amino Acids

25.18

Weight (kDa)

5.01

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 38
AclWI	GGATC	4 cut(s)	561, 561, 580, 593
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	137, 149, 259
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	170, 230, 259, 296, 305
AjnI	CCWGG	3 cut(s)	407, 492, 569
AluBI	AGCT	6 cut(s)	90, 112, 133, 268, 356, 397
AluI	AGCT	6 cut(s)	90, 112, 133, 268, 356, 397
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	3 cut(s)	165, 445, 480
AlwI	GGATC	4 cut(s)	561, 561, 580, 593
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	87, 265, 286, 388
ApoI	RAATTY	3 cut(s)	137, 149, 259
Asp700I	GAANNNNTTC	2 cut(s)	149, 174
AsuII	TTCGAA	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	99, 277, 298, 400
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	3 cut(s)	409, 494, 571
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	165, 445, 480
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	5 cut(s)	12, 88, 266, 287, 389
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	5 cut(s)	13, 89, 267, 288, 390
Bme1390I	CCNGG	3 cut(s)	409, 494, 571
BmiI	GGNNCC	2 cut(s)	236, 587
BmrFI	CCNGG	3 cut(s)	409, 494, 571
BmsI	GCATC	3 cut(s)	88, 415, 433
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	3 cut(s)	67, 383, 512
BseBI	CCWGG	3 cut(s)	409, 494, 571
BseDI	CCNNGG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	3 cut(s)	67, 383, 512
BseMII	CTCAG	5 cut(s)	105, 176, 348, 438, 602
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	4 cut(s)	99, 277, 298, 400
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	210, 238
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	165, 445, 480
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	2 cut(s)	11, 38
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	5 cut(s)	104, 175, 349, 439, 603
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	236, 587
BspPI	GGATC	4 cut(s)	561, 561, 580, 593
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	3 cut(s)	67, 383, 512
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
Bst2UI	CCWGG	3 cut(s)	409, 494, 571
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	216
BstAPI	GCANNNNNTGC	2 cut(s)	425, 443
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	5 cut(s)	91, 162, 357, 447, 611
BstKTI	GATC	8 cut(s)	70, 109, 556, 569, 580, 588, 593, 610
BstMAI	GTCTC	3 cut(s)	165, 445, 480
BstMBI	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 93, 362, 394, 425, 434, 443
BstNI	CCWGG	3 cut(s)	409, 494, 571
BstSCI	CCNGG	3 cut(s)	407, 492, 569
BstV1I	GCAGC	4 cut(s)	99, 277, 298, 400
BstX2I	RGATCY	3 cut(s)	67, 566, 585
BstYI	RGATCY	3 cut(s)	67, 566, 585
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	428, 527
Cac8I	GCNNGC	1 cut(s)	363
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	209
CviAII	CATG	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	91, 162, 357, 447, 611
DpnI	GATC	8 cut(s)	69, 108, 555, 568, 579, 587, 592, 609
DpnII	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	2 cut(s)	149, 259
EcoRII	CCWGG	3 cut(s)	407, 492, 569
EcoT22I	ATGCAT	1 cut(s)	514
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	107
FaiI	YATR	3 cut(s)	105, 116, 537
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	12, 88, 266, 287, 389
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	12, 88, 266, 287, 389
GluI	GCNGC	5 cut(s)	12, 88, 266, 287, 389
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	210, 238
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	210, 238
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	7 cut(s)	165, 180, 220, 547, 590, 607, 612
Hpy188III	TCNNGA	4 cut(s)	104, 142, 296, 338
Hpy8I	GTNNAC	1 cut(s)	653
HpyAV	CCTTC	2 cut(s)	164, 544
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	8 cut(s)	118, 187, 388, 428, 470, 512, 517, 532
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 93, 362, 394, 425, 434, 443
HpyF3I	CTNAG	5 cut(s)	91, 162, 357, 447, 611
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
LmnI	GCTCC	2 cut(s)	130, 240
Lsp1109I	GCAGC	4 cut(s)	99, 277, 298, 400
LweI	GCATC	3 cut(s)	88, 415, 433
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	8 cut(s)	69, 108, 555, 568, 579, 587, 592, 609
MboI	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
MboII	GAAGA	1 cut(s)	233
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	3 cut(s)	67, 566, 585
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	9 cut(s)	28, 137, 149, 259, 438, 458, 500, 540, 639
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	7 cut(s)	16, 36, 164, 217, 319, 490, 592
Mph1103I	ATGCAT	1 cut(s)	514
MroXI	GAANNNNTTC	2 cut(s)	149, 174
MseI	TTAA	2 cut(s)	461, 638
MspI	CCGG	2 cut(s)	210, 238
MspR9I	CCNGG	3 cut(s)	409, 494, 571
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	3 cut(s)	409, 494, 571
MwoI	GCNNNNNNNGC	7 cut(s)	11, 93, 362, 394, 425, 434, 443
NdeII	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	236, 587
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	149, 174
PkrI	GCNGC	5 cut(s)	13, 89, 267, 288, 390
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	407, 492, 569
PspGI	CCWGG	3 cut(s)	407, 492, 569
PspN4I	GGNNCC	2 cut(s)	236, 587
PsuI	RGATCY	3 cut(s)	67, 566, 585
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	461, 638
SatI	GCNGC	5 cut(s)	12, 88, 266, 287, 389
Sau3AI	GATC	8 cut(s)	67, 106, 553, 566, 577, 585, 590, 607
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	409, 494, 571
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	3 cut(s)	88, 415, 433
SfuI	TTCGAA	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	9 cut(s)	28, 137, 149, 259, 438, 458, 500, 540, 639
SsiI	CCGC	2 cut(s)	11, 38
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	407, 492, 569
TaaI	ACNGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	32, 331
TasI	AATT	9 cut(s)	28, 137, 149, 259, 438, 458, 500, 540, 639
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	461, 638
Tru9I	TTAA	2 cut(s)	461, 638
TscAI	CASTG	2 cut(s)	435, 534
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	87, 265, 286, 388
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	2 cut(s)	63, 143
TspRI	CASTG	2 cut(s)	435, 534
XapI	RAATTY	3 cut(s)	137, 149, 259
XmnI	GAANNNNTTC	2 cut(s)	149, 174
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.