Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

20100719 .. 20101055

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007707

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGGAAGAGATTGAGGTGGCCCAAATGGAGGAGAATTCGAAACCGCAGAAGCAAGGAAGCGATAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTGTGCAGATGGTCACGAAGCTTAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGGAGGCTTTCAGAGTTTACAACCAGTAGAGGCGAGTGTGGAGGAAGGCGGTGGTGATTCTGAAGAGGTTGAACGGCTCCGGCAGAGTATTGAGTCATTGAATTCACAGCTTAAGGACTATACGTTGAGGATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

4.34

Isoelectric Point (pI)

70.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 47, 225
AcsI	RAATTY	4 cut(s)	37, 146, 158, 277
AcuI	CTGAAG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	248, 277
AluBI	AGCT	4 cut(s)	99, 121, 142, 286
AluI	AGCT	4 cut(s)	99, 121, 142, 286
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	4 cut(s)	37, 146, 158, 277
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	114, 185
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	76, 115
BspACI	CCGC	3 cut(s)	5, 47, 225
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	113, 184
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	76, 115
Bst6I	CTCTTC	2 cut(s)	3, 234
BstAFI	CTTAAG	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	100, 171
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	2 cut(s)	79, 118
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	76, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	312
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	22
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	23, 99, 121, 142, 183, 253, 286
CviKI_1	RGCY	7 cut(s)	23, 99, 121, 142, 183, 253, 286
DdeI	CTNAG	2 cut(s)	100, 171
DpnI	GATC	2 cut(s)	78, 117
DpnII	GATC	2 cut(s)	76, 115
Eam1104I	CTCTTC	2 cut(s)	3, 234
EarI	CTCTTC	2 cut(s)	3, 234
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	258
EcoRI	GAATTC	3 cut(s)	37, 158, 277
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	114, 297
FatI	CATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	233, 269
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	174, 189, 238
Hpy188III	TCNNGA	3 cut(s)	113, 136, 151
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	100, 171
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	76, 115
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	4 cut(s)	87, 164, 213, 269
Lsp1109I	GCAGC	1 cut(s)	108
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	78, 117
MboI	GATC	2 cut(s)	76, 115
MboII	GAAGA	2 cut(s)	20, 251
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	4 cut(s)	37, 146, 158, 277
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	8 cut(s)	10, 25, 173, 173, 199, 211, 235, 297
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	3 cut(s)	144, 288, 313
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	76, 115
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	41
PagI	TCATGA	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	144, 288, 313
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	2 cut(s)	76, 115
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	278
SetI	ASST	7 cut(s)	21, 101, 123, 144, 246, 288, 302
SfaNI	GCATC	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	164, 287
SmoI	CTYRAG	2 cut(s)	164, 287
Sse9I	AATT	4 cut(s)	37, 146, 158, 277
SsiI	CCGC	3 cut(s)	5, 47, 225
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	41
TasI	AATT	4 cut(s)	37, 146, 158, 277
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	3 cut(s)	144, 288, 313
Tru9I	TTAA	3 cut(s)	144, 288, 313
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	4 cut(s)	37, 146, 158, 277
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.