Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

8614581 .. 8615742

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGACAGCAATGGTGATCTCGCATTGGAGAATGGCAGCTCAGGCTATGCTCATGATCAGCTTGTGCAGATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCAGATTGAAGGCTTTCAGAGTGTGCAACCAGCAGAACCGAGTGAAGCCGGTGGTTCCGAAGAGGTTGAACGGCTCCGGCAGAGCATTGAGTCATTGAATTCGCAGCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCACAGGACCTCTCTGCAAAGCTAGCTGAAGCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAACAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATCGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAACTACGAGACAACCTGGAGGAATTGCGAAATGCATTGCAACCAAAAGAGAGTGCTATCGAGGCACTGCAACATACAATTTCGGAGAAGGATCAGGTAGGAATGTGTATGCTCATCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

262

Amino Acids

29.89

Weight (kDa)

5.06

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	11, 38, 296
AclWI	GGATC	2 cut(s)	405, 765
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	137, 149, 259, 446
AcuI	CTGAAG	2 cut(s)	332, 399
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	6 cut(s)	170, 230, 259, 348, 485, 494
AjnI	CCWGG	3 cut(s)	452, 596, 681
Alw21I	GWGCWC	2 cut(s)	135, 355
Alw26I	GTCTC	3 cut(s)	165, 634, 669
AlwI	GGATC	2 cut(s)	405, 765
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	87, 265, 293, 475, 577
ApoI	RAATTY	4 cut(s)	137, 149, 259, 446
Asp700I	GAANNNNTTC	2 cut(s)	149, 174
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	77, 442
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	135, 355
BbvI	GCAGC	5 cut(s)	99, 277, 280, 487, 589
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	3 cut(s)	454, 598, 683
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	3 cut(s)	165, 634, 669
BfaI	CTAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	7 cut(s)	12, 88, 266, 294, 297, 476, 578
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	7 cut(s)	13, 89, 267, 295, 298, 477, 579
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	454, 598, 683
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	217, 236
BmrFI	CCNGG	3 cut(s)	454, 598, 683
BmsI	GCATC	2 cut(s)	604, 622
BmtI	GCTAGC	1 cut(s)	377
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	2 cut(s)	140, 290
Bsa29I	ATCGAT	1 cut(s)	630
BsaJI	CCNNGG	1 cut(s)	6
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	3 cut(s)	67, 572, 701
BseBI	CCWGG	3 cut(s)	454, 598, 683
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	780
BseMI	GCAATG	3 cut(s)	67, 572, 701
BseMII	CTCAG	4 cut(s)	105, 176, 537, 627
BseXI	GCAGC	5 cut(s)	99, 277, 280, 487, 589
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	630
BsiHKAI	GWGCWC	2 cut(s)	135, 355
BsiSI	CCGG	2 cut(s)	210, 238
BsmAI	GTCTC	3 cut(s)	165, 634, 669
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	135, 355
Bsp143I	GATC	5 cut(s)	67, 106, 397, 433, 757
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	3 cut(s)	11, 38, 296
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	104, 175, 538, 628
BspDI	ATCGAT	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	217, 236
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	405, 765
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	3 cut(s)	67, 572, 701
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	5 cut(s)	67, 106, 397, 433, 757
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	3 cut(s)	454, 598, 683
Bst4CI	ACNGT	1 cut(s)	567
Bst6I	CTCTTC	3 cut(s)	216, 270, 414
BstAPI	GCANNNNNTGC	2 cut(s)	614, 632
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	375, 552
BstDEI	CTNAG	5 cut(s)	91, 162, 320, 546, 636
BstF5I	GGATG	1 cut(s)	780
BstKTI	GATC	5 cut(s)	70, 109, 400, 436, 760
BstMAI	GTCTC	3 cut(s)	165, 634, 669
BstMBI	GATC	5 cut(s)	67, 106, 397, 433, 757
BstNI	CCWGG	3 cut(s)	454, 598, 683
BstSCI	CCNGG	3 cut(s)	452, 596, 681
BstV1I	GCAGC	5 cut(s)	99, 277, 280, 487, 589
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	780
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	617, 731
Cac8I	GCNNGC	2 cut(s)	375, 552
CciI	TCATGA	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	630
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	5 cut(s)	91, 162, 320, 546, 636
DpnI	GATC	5 cut(s)	69, 108, 399, 435, 759
DpnII	GATC	5 cut(s)	67, 106, 397, 433, 757
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	216, 270, 414
EarI	CTCTTC	3 cut(s)	216, 270, 414
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	332, 399
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	2 cut(s)	149, 259
EcoRII	CCWGG	3 cut(s)	452, 596, 681
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	1 cut(s)	107
FaiI	YATR	4 cut(s)	99, 105, 741, 776
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	7 cut(s)	12, 88, 266, 294, 297, 476, 578
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	7 cut(s)	12, 88, 266, 294, 297, 476, 578
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	7 cut(s)	12, 88, 266, 294, 297, 476, 578
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	210, 238
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	3 cut(s)	251, 344, 440
HpaII	CCGG	2 cut(s)	210, 238
HphI	GGTGA	2 cut(s)	77, 442
Hpy188I	TCNGA	6 cut(s)	165, 180, 220, 312, 433, 751
Hpy188III	TCNNGA	7 cut(s)	104, 142, 348, 401, 437, 485, 527
HpyAV	CCTTC	2 cut(s)	164, 748
HpyCH4III	ACNGT	1 cut(s)	567
HpyCH4V	TGCA	9 cut(s)	118, 187, 368, 577, 617, 659, 701, 706, 736
HpyF3I	CTNAG	5 cut(s)	91, 162, 320, 546, 636
Hsp92II	CATG	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	67, 106, 397, 433, 757
LmnI	GCTCC	2 cut(s)	130, 240
Lsp1109I	GCAGC	5 cut(s)	99, 277, 280, 487, 589
LweI	GCATC	2 cut(s)	604, 622
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	5 cut(s)	69, 108, 399, 435, 759
MboI	GATC	5 cut(s)	67, 106, 397, 433, 757
MboII	GAAGA	4 cut(s)	233, 287, 338, 431
MhlI	GDGCHC	2 cut(s)	135, 355
MluCI	AATT	9 cut(s)	28, 137, 149, 259, 405, 446, 647, 689, 744
MlyI	GAGTC	2 cut(s)	260, 434
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	9 cut(s)	16, 36, 164, 217, 265, 371, 508, 679, 721
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	2 cut(s)	149, 174
MseI	TTAA	2 cut(s)	408, 650
MspI	CCGG	2 cut(s)	210, 238
MspR9I	CCNGG	3 cut(s)	454, 598, 683
MvaI	CCWGG	3 cut(s)	454, 598, 683
NdeII	GATC	5 cut(s)	67, 106, 397, 433, 757
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	217, 236
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	103
PdmI	GAANNNNTTC	2 cut(s)	149, 174
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	7 cut(s)	13, 89, 267, 295, 298, 477, 579
PleI	GAGTC	2 cut(s)	259, 434
PpsI	GAGTC	2 cut(s)	259, 434
PpuMI	RGGWCCY	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	3 cut(s)	452, 596, 681
PspGI	CCWGG	3 cut(s)	452, 596, 681
PspN4I	GGNNCC	2 cut(s)	217, 236
PspPI	GGNCC	1 cut(s)	358
PspPPI	RGGWCCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	408, 650
SatI	GCNGC	7 cut(s)	12, 88, 266, 294, 297, 476, 578
Sau3AI	GATC	5 cut(s)	67, 106, 397, 433, 757
Sau96I	GGNCC	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	260, 434
ScrFI	CCNGG	3 cut(s)	454, 598, 683
SduI	GDGCHC	2 cut(s)	135, 355
SfaNI	GCATC	2 cut(s)	604, 622
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	155, 269
SmoI	CTYRAG	2 cut(s)	155, 269
Sse9I	AATT	9 cut(s)	28, 137, 149, 259, 405, 446, 647, 689, 744
SsiI	CCGC	3 cut(s)	11, 38, 296
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	452, 596, 681
TaaI	ACNGT	1 cut(s)	567
TaqI	TCGA	5 cut(s)	32, 443, 520, 630, 726
TasI	AATT	9 cut(s)	28, 137, 149, 259, 405, 446, 647, 689, 744
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	14, 299
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	408, 650
Tru9I	TTAA	2 cut(s)	408, 650
TscAI	CASTG	2 cut(s)	624, 738
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	5 cut(s)	87, 265, 293, 475, 577
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	2 cut(s)	63, 143
TspRI	CASTG	2 cut(s)	624, 738
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	4 cut(s)	137, 149, 259, 446
XmnI	GAANNNNTTC	2 cut(s)	149, 174
XspI	CTAG	1 cut(s)	374
ZrmI	AGTACT	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.