Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

10404206 .. 10404457

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCCGAGGCGGCTCAAATGGAGGATAATTCGAAACCGCAGAGGCACGGAAGCGACGAGAATGGAGATCTCGCATTGGAGAATGGCACTATGGTCACGGAGCTCAAATTCCAGAACGAATTCCTCAAGTCTCGGATTGAAGGCTTTCGCAGTGTGCAACCAGCAGAACCGAGTGAAGCGGTGGTTCCGAAGAGGTTGAACGGCTCCGCAGCATTAAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

74

Amino Acids

8.1

Weight (kDa)

5.03

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	11, 38, 179, 207
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	107, 119
AgsI	TTSAA	2 cut(s)	140, 199
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	135
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	107, 119
Asp700I	GAANNNNTTC	2 cut(s)	119, 144
AsuII	TTCGAA	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	12, 210
BlsI	GCNGC	2 cut(s)	13, 211
BmiI	GGNNCC	2 cut(s)	186, 205
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	4 cut(s)	11, 38, 179, 207
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	186, 205
BspT104I	TTCGAA	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	32
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
CviJI	RGCY	5 cut(s)	5, 14, 103, 144, 204
CviKI_1	RGCY	5 cut(s)	5, 14, 103, 144, 204
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	105
FaiI	YATR	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	12, 210
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	12, 210
GluI	GCNGC	2 cut(s)	12, 210
HaeIII	GGCC	1 cut(s)	5
Hpy188I	TCNGA	2 cut(s)	135, 189
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	100, 209
LpnPI	CCDG	2 cut(s)	125, 174
Lsp1109I	GCAGC	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	28, 107, 119
MnlI	CCTC	4 cut(s)	16, 36, 134, 186
MroXI	GAANNNNTTC	2 cut(s)	119, 144
MseI	TTAA	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	186, 205
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	119, 144
PkrI	GCNGC	2 cut(s)	13, 211
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	186, 205
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	2 cut(s)	12, 210
Sau3AI	GATC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	2 cut(s)	105, 197
SfuI	TTCGAA	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	28, 107, 119
SsiI	CCGC	4 cut(s)	11, 38, 179, 207
SstI	GAGCTC	1 cut(s)	105
TaqI	TCGA	1 cut(s)	32
TasI	AATT	3 cut(s)	28, 107, 119
TauI	GCSGC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	94
TspGWI	ACGGA	2 cut(s)	63, 113
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	2 cut(s)	107, 119
XmnI	GAANNNNTTC	2 cut(s)	119, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.