Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

21844347 .. 21845179

Gene Structure 833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG216100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCGAGGCGGCTCAAATGGAGGACAATTCGAAACCGCAGAGGCACGGAAGCGACAGCAATGGAGATCTCGCATTGGAGAATGGCAGCTCAGGCGATGCTCATGATCAGCTTCTTGAGGAAGAGAAGCAAACACGAGCTGCGGCAGAAAAGGCTCTGAAGCACCTTAGAGAAGAACACTTGGAAGCTGATTCAAGAGCGCAGGACCTCTCTGCAAAGCTAGCTGAATCTCAACAGAAGTTGGATCAAGAAATTAAAGAGCGTGAAGAGAAGTACTCTGATCTTGACTCGAAATTCACCAGGCTTCACAAACGAGCAAAGCAGCGTATTCAAGATGTTCAAAAGGAAAAAGATGACATTGAGGCTCGATTTCGTGAAGTAAATGAAAGAGCTGAGCGAGCATTATCCCAGCAGTCAGCATTGCAGCAAGAGCTTGACAAAACCAGGCAACAAGCAAACGATGCACTGAAAGCAATTGATGCTGAGAGACAACAATTAAGAAGTGCAAATAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

172

Amino Acids

19.7

Weight (kDa)

5.38

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	11, 38, 143
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	195, 332, 341
AjnI	CCWGG	2 cut(s)	299, 443
AluBI	AGCT	8 cut(s)	90, 112, 140, 188, 220, 224, 392, 433
AluI	AGCT	8 cut(s)	90, 112, 140, 188, 220, 224, 392, 433
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	87, 140, 322, 424
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	289
AsuII	TTCGAA	1 cut(s)	32
AsuNHI	GCTAGC	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	99, 127, 334, 436
BciT130I	CCWGG	2 cut(s)	301, 445
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	221
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	6 cut(s)	12, 88, 141, 144, 323, 425
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	6 cut(s)	13, 89, 142, 145, 324, 426
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	301, 445
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	301, 445
BmsI	GCATC	3 cut(s)	88, 451, 469
BmtI	GCTAGC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
Bpu10I	CCTNAGC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	67, 419
BseBI	CCWGG	2 cut(s)	301, 445
BseDI	CCNNGG	1 cut(s)	6
BseMI	GCAATG	2 cut(s)	67, 419
BseMII	CTCAG	3 cut(s)	105, 384, 474
BseXI	GCAGC	4 cut(s)	99, 127, 334, 436
BseYI	CCCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	67, 106, 244, 280
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	11, 38, 143
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	104, 385, 475
BspHI	TCATGA	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	67, 419
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	4 cut(s)	67, 106, 244, 280
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	301, 445
Bst6I	CTCTTC	2 cut(s)	117, 261
BstAPI	GCANNNNNTGC	2 cut(s)	461, 479
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	222, 399
BstDEI	CTNAG	4 cut(s)	91, 167, 393, 483
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	70, 109, 247, 283
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	4 cut(s)	67, 106, 244, 280
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 93, 152, 221, 398, 430, 461, 470, 479
BstNI	CCWGG	2 cut(s)	301, 445
BstSCI	CCNGG	2 cut(s)	299, 443
BstV1I	GCAGC	4 cut(s)	99, 127, 334, 436
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	222, 399
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	91, 167, 393, 483
DpnI	GATC	4 cut(s)	69, 108, 246, 282
DpnII	GATC	4 cut(s)	67, 106, 244, 280
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	117, 261
EarI	CTCTTC	2 cut(s)	117, 261
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	299, 443
FaeI	CATG	1 cut(s)	107
FaiI	YATR	1 cut(s)	105
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	6 cut(s)	12, 88, 141, 144, 323, 425
Fsp4HI	GCNGC	6 cut(s)	12, 88, 141, 144, 323, 425
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	6 cut(s)	12, 88, 141, 144, 323, 425
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	3 cut(s)	191, 227, 287
HphI	GGTGA	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	159, 280
Hpy188III	TCNNGA	7 cut(s)	104, 116, 195, 248, 284, 332, 374
HpyCH4V	TGCA	4 cut(s)	215, 424, 464, 506
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 93, 152, 221, 398, 430, 461, 470, 479
HpyF3I	CTNAG	4 cut(s)	91, 167, 393, 483
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	67, 106, 244, 280
LpnPI	CCDG	7 cut(s)	78, 188, 286, 313, 422, 430, 457
Lsp1109I	GCAGC	4 cut(s)	99, 127, 334, 436
LweI	GCATC	3 cut(s)	88, 451, 469
MaeI	CTAG	1 cut(s)	221
MalI	GATC	4 cut(s)	69, 108, 246, 282
MboI	GATC	4 cut(s)	67, 106, 244, 280
MboII	GAAGA	3 cut(s)	134, 185, 278
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	5 cut(s)	28, 252, 293, 474, 494
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	16, 36, 112, 218, 355
MseI	TTAA	2 cut(s)	255, 497
MspR9I	CCNGG	2 cut(s)	301, 445
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	301, 445
MwoI	GCNNNNNNNGC	9 cut(s)	11, 93, 152, 221, 398, 430, 461, 470, 479
NdeII	GATC	4 cut(s)	67, 106, 244, 280
NheI	GCTAGC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	191, 227
PkrI	GCNGC	6 cut(s)	13, 89, 142, 145, 324, 426
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	299, 443
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	2 cut(s)	299, 443
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	255, 497
SatI	GCNGC	6 cut(s)	12, 88, 141, 144, 323, 425
Sau3AI	GATC	4 cut(s)	67, 106, 244, 280
Sau96I	GGNCC	1 cut(s)	205
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	301, 445
SfaNI	GCATC	3 cut(s)	88, 451, 469
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	5 cut(s)	28, 252, 293, 474, 494
SsiI	CCGC	3 cut(s)	11, 38, 143
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	299, 443
TaqI	TCGA	3 cut(s)	32, 290, 367
TasI	AATT	5 cut(s)	28, 252, 293, 474, 494
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	2 cut(s)	14, 146
TfiI	GAWTC	2 cut(s)	191, 227
Tru1I	TTAA	2 cut(s)	255, 497
Tru9I	TTAA	2 cut(s)	255, 497
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	4 cut(s)	87, 140, 322, 424
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	293
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.