Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Reverse (-)

10068040 .. 10070742

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGGAGGAGAAGGACAGAGAAATTTCTAGACTTGTAGATGATAATAAGAACCTTCATCAATCTTTGGAGTCAAGACCAAAGGTTGATCATAACGATAATTATAGCACAGGCATGTATAAACAGGATCCATCAAGTTTAAGCACCTCTGCGTTAGAACAGCAGATTCTGATTCTGGCAAGGCAACAAGCGCAAAGAGAGGAAGAGCTAGCACAGTCACAGAGGCACATTTTAGCGCTTCAAGAGGAAATTGAGGAGCTGGAGCATGAAAATCGTCTGCATAGCCAACAGGAAACAATGTTGAAGACTGAGCTTCGCAACATGGAAAGATCACAGAAGAGGGAAGGAGTAGATATGACTTACCTCAAAAATGTTATATTAAAGCTTCTTGAAACTGGTGAAGTGGAGGCTCTATTACCTGTGGTTGGTATGCTCCTTCAGTTTAGTCCTGAAGAGATCCAGAAGTGTCAACAAGCATACCGCGCATCTGTAGATGTCCCTCCTAGCGCAGCAAGTGATGCTTCAGGATCTGCCACCTCCTCGCTTTTCTCAAGATTCTCATTCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

189

Amino Acids

21.62

Weight (kDa)

4.96

Isoelectric Point (pI)

71.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRIP	PF01465	116 - 156	1.4e-13	GRIP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	483
AciI	CCGC	1 cut(s)	481
AclWI	GGATC	4 cut(s)	122, 135, 451, 535
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	3 cut(s)	422, 471, 507
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	242, 304, 392
AluBI	AGCT	4 cut(s)	208, 259, 313, 385
AluI	AGCT	4 cut(s)	208, 259, 313, 385
AlwI	GGATC	4 cut(s)	122, 135, 451, 535
AlwNI	CAGNNNCTG	2 cut(s)	169, 530
Aor51HI	AGCGCT	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	24
AspLEI	GCGC	4 cut(s)	193, 238, 485, 509
AsuHPI	GGTGA	1 cut(s)	410
AsuNHI	GCTAGC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	3 cut(s)	30, 209, 504
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	2 cut(s)	494, 508
BmtI	GCTAGC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	3 cut(s)	23, 269, 529
BseXI	GCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	88, 127, 329, 456, 527
BspACI	CCGC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	129
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	4 cut(s)	122, 135, 451, 535
BspQI	GCTCTTC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	400
BssMI	GATC	5 cut(s)	88, 127, 329, 456, 527
Bst4CI	ACNGT	1 cut(s)	216
Bst6I	CTCTTC	3 cut(s)	198, 332, 447
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	4 cut(s)	193, 238, 485, 509
BstKTI	GATC	5 cut(s)	91, 130, 332, 459, 530
BstMBI	GATC	5 cut(s)	88, 127, 329, 456, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	190, 482, 518
BstNSI	RCATGY	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	3 cut(s)	127, 456, 527
BstYI	RGATCY	3 cut(s)	127, 456, 527
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	2 cut(s)	169, 530
CfoI	GCGC	4 cut(s)	193, 238, 485, 509
CviAII	CATG	3 cut(s)	115, 266, 322
CviJI	RGCY	6 cut(s)	208, 259, 285, 313, 385, 410
CviKI_1	RGCY	6 cut(s)	208, 259, 285, 313, 385, 410
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	5 cut(s)	90, 129, 331, 458, 529
DpnII	GATC	5 cut(s)	88, 127, 329, 456, 527
Eam1104I	CTCTTC	3 cut(s)	198, 332, 447
EarI	CTCTTC	3 cut(s)	198, 332, 447
Eco47III	AGCGCT	1 cut(s)	237
Eco57I	CTGAAG	3 cut(s)	422, 471, 507
FaeI	CATG	3 cut(s)	118, 269, 325
FalI	AAGNNNNNCTT	2 cut(s)	505, 537
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	3 cut(s)	114, 265, 321
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	3 cut(s)	30, 209, 504
GlaI	GCGC	4 cut(s)	192, 237, 484, 508
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	239
HhaI	GCGC	4 cut(s)	193, 238, 485, 509
Hin1II	CATG	3 cut(s)	118, 269, 325
Hin6I	GCGC	4 cut(s)	191, 236, 483, 507
HinP1I	GCGC	4 cut(s)	191, 236, 483, 507
HincII	GTYRAC	1 cut(s)	470
HindII	GTYRAC	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	4 cut(s)	71, 166, 172, 555
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	8 cut(s)	30, 75, 242, 389, 449, 460, 525, 552
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	7, 65, 338, 446
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	190, 482, 518
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	118, 269, 325
HspAI	GCGC	4 cut(s)	191, 236, 483, 507
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	88, 127, 329, 456, 527
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	3 cut(s)	256, 262, 438
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	2 cut(s)	494, 508
MaeI	CTAG	3 cut(s)	30, 209, 504
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	5 cut(s)	90, 129, 331, 458, 529
MboI	GATC	5 cut(s)	88, 127, 329, 456, 527
MboII	GAAGA	4 cut(s)	215, 316, 349, 464
MflI	RGATCY	3 cut(s)	127, 456, 527
MluCI	AATT	3 cut(s)	24, 100, 249
MlyI	GAGTC	1 cut(s)	80
MseI	TTAA	3 cut(s)	140, 380, 568
MslI	CAYNNNNRTG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	190, 482, 518
NdeII	GATC	5 cut(s)	88, 127, 329, 456, 527
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	118, 269, 325
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	166, 172, 555
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	129
PstNI	CAGNNNCTG	2 cut(s)	169, 530
PsuI	RGATCY	3 cut(s)	127, 456, 527
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	140, 380, 568
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	5 cut(s)	88, 127, 329, 456, 527
SchI	GAGTC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	494, 508
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	3 cut(s)	24, 100, 249
SsiI	CCGC	1 cut(s)	481
SspMI	CTAG	3 cut(s)	30, 209, 504
TaaI	ACNGT	1 cut(s)	216
TasI	AATT	3 cut(s)	24, 100, 249
TfiI	GAWTC	3 cut(s)	166, 172, 555
Tru1I	TTAA	3 cut(s)	140, 380, 568
Tru9I	TTAA	3 cut(s)	140, 380, 568
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	47, 282
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	1 cut(s)	118
XspI	CTAG	3 cut(s)	30, 209, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.