Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001628

Physical Location & Seq

Genomic Coordinates Forward (+)

5232126 .. 5234809

Gene Structure 2684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0067200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGATCAGATTCATATTGATGGTGAACAAACAAGGGCAGACCCGTCTTGCCCAATACTACGAATATCTCACCCTCGAAGAAAGGCGAGCTCTTGAAGCTGAAATCGTCCGCAAATGCCTCGCCCGCAACGAGCAACAGTGTTCATTTGTCGAGCACCGGAATTACAAAATTGTTTACAGGCGCTATGCTTCACTGTTTTTCCTGGTTGGAGTAGACAATGATGAAAATGAGCTTGCAATTTTGGAATTCATACATCTGTTAGTTGAAACCATGGACCGCCATTTTGGCAATGTGTGTGAACTAGACATCATGTTCCATTTGGAGAAAGCGCATTTCATGTTGGAGGAAATGGTCATGAATGGGTGTATCGTCGAGACAAGCAAGACTAACATCCTGGCACCGATACAGCTGATGGACAAGACCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005794 GO:0005802 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016043 GO:0016192 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0031984 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048193 GO:0048285 GO:0051179 GO:0051234 GO:0051321 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098791 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRIP

Protein Analysis

143

Amino Acids

17.0

Weight (kDa)

5.54

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	3 - 141	1.5e-46	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66030 AT5G66030 AT5G66030 AT5G66030
fragaria_vesca	FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521 FvH4_1g10521
malus_domestica	MD02G1119300.v1.1 MD15G1233300.v1.1
prunus_persica	Prupe.7G179600_v2.0.a1 Prupe.7G179600_v2.0.a1
pyrus_communis	pycom02g09300 pycom05g12530 pycom15g20780
rosa_chinensis	RchiOBHm_Chr2g0097451 RchiOBHm_Chr2g0097461 RchiOBHm_Chr2g0097561 RchiOBHm_Chr2g0097581 RchiOBHm_Chr6g0253501
rosa_laevigata	RLG00000007707 RLG00000016726
rosa_multiflora	Rmu_sc0003151.1_g000017 Rmu_sc0005929.1_g000013 Rmu_sc0009080.1_g000004 Rmu_sc0023738.1_g000001 Rmu_sc0023972.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144680 Rroxscaffold_4G00289770
rosa_rugosa	Rorug02G0067100 Rorug02G0067200 Rorug02G0067300 Rorug02G0067400 Rorug05G0050700
rosa_samantha	Rh2AG113500 Rh2BG116600 Rh2CG118600 Rh2DG117600 Rh3AG216100 Rh3BG375000 Rh3CG269100 Rh3DG243100 Rh4BG210200 Rh4BG210300
rosa_wichuraiana	Rw2G008900 Rw2G019040 Rw3G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	3 cut(s)	112, 127, 280
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	98, 269
AjnI	CCWGG	2 cut(s)	204, 396
AluBI	AGCT	4 cut(s)	92, 101, 235, 412
AluI	AGCT	4 cut(s)	92, 101, 235, 412
Alw21I	GWGCWC	2 cut(s)	94, 159
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	2 cut(s)	186, 334
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	37, 64
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	94, 159
BccI	CCATC	2 cut(s)	16, 409
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	206, 398
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	187
BglI	GCCNNNNNGGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	206, 398
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	2 cut(s)	206, 398
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	2 cut(s)	206, 398
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	94, 159
BsiSI	CCGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	94, 159
Bsp143I	GATC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	112, 127, 280
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	206, 398
Bst4CI	ACNGT	2 cut(s)	141, 198
BstC8I	GCNNGC	3 cut(s)	90, 127, 237
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	2 cut(s)	186, 334
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 126, 288
BstNI	CCWGG	2 cut(s)	206, 398
BstSCI	CCNGG	2 cut(s)	204, 396
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	146, 194
Cac8I	GCNNGC	3 cut(s)	90, 127, 237
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	2 cut(s)	186, 334
Cfr13I	GGNCC	1 cut(s)	277
CviAII	CATG	4 cut(s)	274, 313, 340, 358
CviJI	RGCY	4 cut(s)	92, 101, 235, 412
CviKI_1	RGCY	4 cut(s)	92, 101, 235, 412
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	204, 396
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	277, 316, 343, 361
FaiI	YATR	7 cut(s)	17, 189, 254, 275, 314, 341, 359
FatI	CATG	4 cut(s)	273, 312, 339, 357
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	185, 333
HaeII	RGCGCY	1 cut(s)	187
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	2 cut(s)	186, 334
Hin1II	CATG	4 cut(s)	277, 316, 343, 361
Hin6I	GCGC	2 cut(s)	184, 332
HinP1I	GCGC	2 cut(s)	184, 332
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	37, 64
Hpy166II	GTNNAC	4 cut(s)	28, 178, 217, 302
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	3 cut(s)	95, 358, 376
Hpy8I	GTNNAC	4 cut(s)	28, 178, 217, 302
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	2 cut(s)	141, 198
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 126, 288
Hsp92II	CATG	4 cut(s)	277, 316, 343, 361
HspAI	GCGC	2 cut(s)	184, 332
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	6 cut(s)	166, 173, 191, 218, 383, 410
MaeI	CTAG	1 cut(s)	305
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	2 cut(s)	94, 159
MluCI	AATT	4 cut(s)	163, 171, 240, 248
MmeI	TCCRAC	2 cut(s)	190, 324
MnlI	CCTC	3 cut(s)	86, 131, 340
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	206, 398
MvaI	CCWGG	2 cut(s)	206, 398
MwoI	GCNNNNNNNGC	3 cut(s)	98, 126, 288
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	4 cut(s)	277, 316, 343, 361
NlaIV	GGNNCC	1 cut(s)	402
PagI	TCATGA	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	204, 396
PspGI	CCWGG	2 cut(s)	204, 396
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	94
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	206, 398
SduI	GDGCHC	2 cut(s)	94, 159
SetI	ASST	5 cut(s)	94, 103, 237, 414, 428
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	163, 171, 240, 248
SsiI	CCGC	3 cut(s)	112, 127, 280
SspMI	CTAG	1 cut(s)	305
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	204, 396
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	141, 198
TaqI	TCGA	3 cut(s)	78, 153, 375
TasI	AATT	4 cut(s)	163, 171, 240, 248
TfiI	GAWTC	1 cut(s)	12
TscAI	CASTG	2 cut(s)	146, 201
TspDTI	ATGAA	6 cut(s)	4, 135, 240, 241, 328, 374
TspRI	CASTG	2 cut(s)	146, 201
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.